Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LXN10_RS01255 Genome accession   NZ_CP090177
Coordinates   242316..243665 (+) Length   449 a.a.
NCBI ID   WP_375724153.1    Uniprot ID   -
Organism   Arcobacter sp. KX21116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237316..248665
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXN10_RS01225 (LXN10_01225) - 237356..238276 (-) 921 WP_375724147.1 sialidase family protein -
  LXN10_RS01230 (LXN10_01230) - 238406..238855 (-) 450 WP_375724148.1 DUF2059 domain-containing protein -
  LXN10_RS01235 (LXN10_01235) - 239054..240154 (+) 1101 WP_375724149.1 hypothetical protein -
  LXN10_RS01240 (LXN10_01240) - 241074..241505 (-) 432 WP_375724150.1 hypothetical protein -
  LXN10_RS01245 (LXN10_01245) - 241578..241799 (-) 222 WP_375724151.1 hypothetical protein -
  LXN10_RS01250 (LXN10_01250) - 241799..242059 (-) 261 WP_375724152.1 hypothetical protein -
  LXN10_RS01255 (LXN10_01255) radA 242316..243665 (+) 1350 WP_375724153.1 DNA repair protein RadA Machinery gene
  LXN10_RS01260 (LXN10_01260) - 243680..244084 (-) 405 WP_375724154.1 thioesterase family protein -
  LXN10_RS01265 (LXN10_01265) ybeY 244202..244621 (+) 420 WP_375724155.1 rRNA maturation RNase YbeY -
  LXN10_RS01270 (LXN10_01270) - 244622..245542 (+) 921 WP_375724156.1 calcium/sodium antiporter -
  LXN10_RS01275 (LXN10_01275) - 245544..245948 (-) 405 WP_375724157.1 Fur family transcriptional regulator -
  LXN10_RS01280 (LXN10_01280) - 246196..246633 (+) 438 WP_013135918.1 DNA starvation/stationary phase protection protein -
  LXN10_RS01285 (LXN10_01285) - 246711..247364 (+) 654 WP_375724158.1 ferritin family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 49367.89 Da        Isoelectric Point: 6.3775

>NTDB_id=640941 LXN10_RS01255 WP_375724153.1 242316..243665(+) (radA) [Arcobacter sp. KX21116]
MAKKKTTLFECQHCGEQATKWMGKCPSCGGWDSFVELNTEQQEVLKQTSKIINTTSKARPITQIEQDDIIRFSSNNHEFD
LVLGGGIVPGSLTLIGGSPGVGKSTLLLKVAGDISQSGKKVLYVSGEESMGQIKLRANRLDANSDNLYLLSEIKLEEIQE
ELLRQNYEAVVIDSIQTIYSSSLTSAPGSVSQVREITFELMRKAKESDIAMFIIGHITKDGSIAGPRVLEHMVDTVLYFE
GESSKELRMLRGFKNRFGSTSEIGIFEMTAEGLISAKDIASKFFDKSKPQSGSALTVVMEGSRALIIEVQALVCESTYPN
PKRSATGFDVNRLNMLLALLEKKLDLPLNHYDVFINISGGIKIKESSADLAVIASIISSFRDRPISKESVFIGEVSLTGE
IKDVYSIDMRLKEASAQGVTKAIVAQKTNLKTKLKIFPVDEVVKMIELF

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=640941 LXN10_RS01255 WP_375724153.1 242316..243665(+) (radA) [Arcobacter sp. KX21116]
ATGGCTAAGAAAAAAACAACTCTTTTTGAGTGTCAGCACTGTGGAGAACAAGCTACCAAATGGATGGGAAAATGTCCATC
TTGTGGAGGTTGGGATAGCTTTGTTGAACTCAATACCGAACAACAAGAAGTATTAAAACAAACATCAAAAATAATAAACA
CAACATCAAAAGCAAGACCAATAACCCAAATAGAACAAGATGACATCATCAGATTTTCATCAAATAACCATGAATTTGAT
TTAGTCTTAGGTGGAGGAATAGTTCCTGGAAGCCTTACACTTATAGGTGGAAGTCCAGGAGTTGGTAAATCAACCCTACT
TTTAAAAGTAGCAGGTGACATCTCACAATCAGGTAAAAAAGTTCTTTATGTCTCGGGTGAAGAGAGTATGGGACAAATAA
AACTTCGAGCAAATAGACTTGATGCAAATAGTGATAACCTTTATTTATTATCTGAAATCAAACTAGAAGAGATACAAGAA
GAACTATTAAGACAAAATTATGAAGCAGTAGTAATTGACTCTATTCAAACTATCTATTCTAGTTCACTCACCTCTGCTCC
TGGTTCTGTTTCACAAGTAAGAGAGATAACATTTGAACTTATGCGTAAAGCAAAAGAATCTGATATCGCTATGTTTATCA
TAGGACATATCACAAAAGATGGAAGCATAGCAGGACCTAGAGTTTTAGAACACATGGTTGATACAGTTTTATACTTTGAA
GGAGAATCATCAAAAGAACTTAGAATGCTAAGGGGCTTTAAAAATAGATTTGGAAGTACGAGTGAGATAGGTATCTTTGA
GATGACAGCTGAAGGACTTATAAGTGCTAAAGACATAGCCTCTAAGTTTTTTGATAAAAGTAAACCCCAAAGTGGTTCTG
CTTTGACTGTGGTTATGGAAGGAAGCCGAGCACTTATTATAGAAGTACAAGCCTTAGTTTGTGAAAGTACTTATCCAAAC
CCAAAACGAAGTGCTACAGGATTTGATGTAAATAGATTAAACATGCTTTTAGCCCTACTTGAAAAGAAACTTGATTTACC
TCTAAATCACTATGATGTATTTATAAATATAAGTGGTGGTATTAAGATAAAAGAGAGTTCTGCTGATTTGGCTGTGATTG
CTTCGATTATTAGTTCATTTAGGGATAGACCTATTTCAAAAGAGTCAGTATTTATTGGTGAAGTTTCACTTACAGGTGAG
ATAAAAGATGTATATTCTATAGATATGAGACTAAAAGAGGCTAGTGCGCAAGGTGTTACAAAAGCAATAGTTGCTCAAAA
AACAAATTTAAAAACAAAATTAAAAATCTTCCCAGTGGATGAAGTGGTAAAAATGATTGAGCTATTTTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

Subunit ChlI of Mg-chelatase (ChlI)

(348-427)

AAA domain (AAA_25)

(65-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.585

95.1

0.481
  radA Streptococcus pneumoniae Rx1

47.332

95.991

0.454
  radA Streptococcus pneumoniae D39

47.332

95.991

0.454
  radA Streptococcus pneumoniae R6

47.332

95.991

0.454
  radA Streptococcus pneumoniae TIGR4

47.332

95.991

0.454
  radA Streptococcus mitis SK321

47.332

95.991

0.454
  radA Streptococcus mitis NCTC 12261

47.332

95.991

0.454