Detailed information    

insolico Bioinformatically predicted

Overview

Name   degQ   Type   Regulator
Locus tag   LXH20_RS14920 Genome accession   NZ_CP090150
Coordinates   3051012..3051152 (-) Length   46 a.a.
NCBI ID   WP_003152043.1    Uniprot ID   A3KLB4
Organism   Bacillus velezensis strain BR-01     
Function   modification of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046012..3056152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXH20_RS14895 (LXH20_14895) - 3046352..3046735 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  LXH20_RS14900 (LXH20_14900) comA 3046757..3047401 (-) 645 WP_014418762.1 response regulator transcription factor Regulator
  LXH20_RS14905 (LXH20_14905) comP 3047482..3049773 (-) 2292 WP_022553709.1 histidine kinase Regulator
  LXH20_RS14910 (LXH20_14910) comX 3049785..3049949 (-) 165 WP_007613432.1 competence pheromone ComX -
  LXH20_RS14915 (LXH20_14915) - 3049949..3050860 (-) 912 WP_022553710.1 polyprenyl synthetase family protein -
  LXH20_RS14920 (LXH20_14920) degQ 3051012..3051152 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  LXH20_RS14925 (LXH20_14925) - 3051618..3051959 (+) 342 WP_014418765.1 hypothetical protein -
  LXH20_RS14930 (LXH20_14930) - 3051966..3053189 (-) 1224 WP_014418766.1 EAL and HDOD domain-containing protein -
  LXH20_RS14935 (LXH20_14935) - 3053319..3054785 (-) 1467 WP_233922936.1 nicotinate phosphoribosyltransferase -
  LXH20_RS14940 (LXH20_14940) - 3054803..3055354 (-) 552 WP_003152033.1 cysteine hydrolase family protein -
  LXH20_RS14945 (LXH20_14945) - 3055451..3055849 (-) 399 WP_003152031.1 YueI family protein -

Sequence

Protein


Download         Length: 46 a.a.        Molecular weight: 5518.30 Da        Isoelectric Point: 4.9432

>NTDB_id=640921 LXH20_RS14920 WP_003152043.1 3051012..3051152(-) (degQ) [Bacillus velezensis strain BR-01]
MENKLEEVKQLLFRLENDIRETTDSLRNINKSIDQLDKFSYAMKIS

Nucleotide


Download         Length: 141 bp        

>NTDB_id=640921 LXH20_RS14920 WP_003152043.1 3051012..3051152(-) (degQ) [Bacillus velezensis strain BR-01]
GTGGAAAACAAATTAGAAGAAGTAAAGCAATTATTATTCCGACTTGAAAATGATATCAGAGAAACAACCGACTCATTACG
AAACATTAACAAAAGCATTGATCAGCTCGATAAATTCTCATATGCAATGAAAATTTCTTAA

Domains

Predicted by InterproScan.

DegQ (SacQ) family (DegQ)

(1-46)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degQ Bacillus subtilis subsp. subtilis str. 168

89.13

100

0.891