Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LXH20_RS07315 Genome accession   NZ_CP090150
Coordinates   1404256..1404540 (+) Length   94 a.a.
NCBI ID   WP_014417633.1    Uniprot ID   I2C4H1
Organism   Bacillus velezensis strain BR-01     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1399256..1409540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXH20_RS07295 (LXH20_07295) - 1400500..1401408 (+) 909 WP_022553408.1 ketopantoate reductase family protein -
  LXH20_RS07300 (LXH20_07300) - 1401439..1402671 (-) 1233 WP_007409644.1 aminopeptidase -
  LXH20_RS07305 (LXH20_07305) - 1402772..1402906 (-) 135 WP_003154559.1 protein YkpC -
  LXH20_RS07310 (LXH20_07310) mreBH 1402978..1403985 (-) 1008 WP_014417632.1 cell shape-determining protein MreBH -
  LXH20_RS07315 (LXH20_07315) abrB 1404256..1404540 (+) 285 WP_014417633.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LXH20_RS07320 (LXH20_07320) - 1404713..1406017 (+) 1305 WP_014417634.1 ATP-binding protein -
  LXH20_RS07325 (LXH20_07325) - 1406019..1406846 (+) 828 WP_014417635.1 gamma-glutamylcyclotransferase -
  LXH20_RS07330 (LXH20_07330) ktrC 1406887..1407552 (+) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  LXH20_RS07335 (LXH20_07335) ade 1407701..1409434 (+) 1734 WP_022553404.1 adenine deaminase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10516.38 Da        Isoelectric Point: 5.8979

>NTDB_id=640890 LXH20_RS07315 WP_014417633.1 1404256..1404540(+) (abrB) [Bacillus velezensis strain BR-01]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITSENQEYGNGKIILSPEGAK
MLLEEIEEALKGRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=640890 LXH20_RS07315 WP_014417633.1 1404256..1404540(+) (abrB) [Bacillus velezensis strain BR-01]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTAAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACCTCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGGTAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C4H1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543