Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OGM49_RS03795 Genome accession   NZ_CP107128
Coordinates   789952..790392 (-) Length   146 a.a.
NCBI ID   WP_000360914.1    Uniprot ID   A0A0H2YVZ3
Organism   Escherichia coli strain S7     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 784952..795392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGM49_RS03770 (OGM49_03765) coaE 785442..786062 (-) 621 WP_001269520.1 dephospho-CoA kinase -
  OGM49_RS03775 (OGM49_03770) - 786087..786131 (+) 45 WP_120795372.1 protein YacM -
  OGM49_RS03780 (OGM49_03775) guaC 786287..787330 (+) 1044 WP_001217320.1 GMP reductase -
  OGM49_RS03785 (OGM49_03780) hofC 787365..788567 (-) 1203 WP_000157289.1 protein transport protein HofC -
  OGM49_RS03790 (OGM49_03785) gspE 788557..789942 (-) 1386 Protein_738 type II secretion system protein GspE -
  OGM49_RS03795 (OGM49_03790) pilA 789952..790392 (-) 441 WP_000360914.1 prepilin peptidase-dependent pilin Machinery gene
  OGM49_RS03800 (OGM49_03795) nadC 790596..791489 (-) 894 WP_001135168.1 carboxylating nicotinate-nucleotide diphosphorylase -
  OGM49_RS03805 (OGM49_03800) ampD 791577..792128 (+) 552 WP_000923703.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  OGM49_RS03810 (OGM49_03805) ampE 792125..792979 (+) 855 WP_000171980.1 beta-lactamase regulator AmpE -
  OGM49_RS03815 (OGM49_03810) aroP 793022..794392 (-) 1371 WP_000399017.1 aromatic amino acid transporter AroP -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15620.77 Da        Isoelectric Point: 4.5237

>NTDB_id=640883 OGM49_RS03795 WP_000360914.1 789952..790392(-) (pilA) [Escherichia coli strain S7]
MDKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQTFVPYRTAVELCALEHGGLNTCDGGSNGIPSPTTTR
YVSAMSVAKGVVSLTGQESLNGLSVVMTPGWDNANGVTGWTRNCNIQSDSALQQACEDVFRFDDAN

Nucleotide


Download         Length: 441 bp        

>NTDB_id=640883 OGM49_RS03795 WP_000360914.1 789952..790392(-) (pilA) [Escherichia coli strain S7]
ATGGACAAGCAACGCGGTTTTACACTTATTGAACTGATGGTGGTTATTGGCATCATTGCCATTTTAAGCGCCATTGGTAT
TCCCGCTTATCAAAACTACCTGCGCAAAGCCGCACTCACCGACATGCTACAAACCTTTGTGCCTTACCGTACCGCCGTAG
AGTTGTGCGCGCTGGAACATGGTGGATTAAATACCTGCGACGGTGGCAGCAATGGCATTCCTTCGCCTACCACCACCCGC
TATGTTTCAGCCATGAGTGTGGCAAAGGGCGTGGTGTCGCTGACCGGGCAAGAAAGTCTCAATGGGCTAAGCGTCGTCAT
GACACCGGGTTGGGATAACGCAAACGGCGTCACCGGCTGGACGCGTAACTGCAATATTCAAAGTGACAGCGCATTGCAGC
AAGCCTGCGAAGATGTCTTCCGCTTTGATGACGCCAACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2YVZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Haemophilus influenzae 86-028NP

43.089

84.247

0.363