Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LXH20_RS05350 Genome accession   NZ_CP090150
Coordinates   1045095..1045673 (+) Length   192 a.a.
NCBI ID   WP_003155179.1    Uniprot ID   G1BIW7
Organism   Bacillus velezensis strain BR-01     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1040095..1050673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXH20_RS19870 - 1040595..1041110 (-) 516 WP_369719112.1 methyl-accepting chemotaxis protein -
  LXH20_RS19875 - 1041354..1042013 (-) 660 Protein_986 protoglobin domain-containing protein -
  LXH20_RS05335 (LXH20_05335) - 1042010..1043533 (-) 1524 WP_014417355.1 FAD-dependent oxidoreductase -
  LXH20_RS05340 (LXH20_05340) - 1043658..1044515 (+) 858 WP_007610477.1 SDR family oxidoreductase -
  LXH20_RS05345 (LXH20_05345) - 1044546..1044779 (-) 234 WP_007610478.1 IDEAL domain-containing protein -
  LXH20_RS05350 (LXH20_05350) comK 1045095..1045673 (+) 579 WP_003155179.1 competence protein ComK Regulator
  LXH20_RS05355 (LXH20_05355) - 1045819..1046187 (+) 369 WP_022553588.1 iron chaperone -
  LXH20_RS05360 (LXH20_05360) - 1046214..1046585 (+) 372 WP_022553587.1 iron chaperone -
  LXH20_RS05365 (LXH20_05365) - 1046708..1047217 (+) 510 WP_022553586.1 MepB family protein -
  LXH20_RS05370 (LXH20_05370) - 1047446..1048156 (-) 711 WP_017417404.1 YrpD family protein -
  LXH20_RS05375 (LXH20_05375) - 1048352..1048621 (+) 270 WP_003155168.1 excalibur calcium-binding domain-containing protein -
  LXH20_RS05380 (LXH20_05380) - 1048654..1048971 (-) 318 WP_003155166.1 YbjQ family protein -
  LXH20_RS05385 (LXH20_05385) - 1049013..1050482 (-) 1470 WP_022553585.1 sodium:solute symporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22315.58 Da        Isoelectric Point: 8.1419

>NTDB_id=640877 LXH20_RS05350 WP_003155179.1 1045095..1045673(+) (comK) [Bacillus velezensis strain BR-01]
MCQKTHAPLESYEVNRSTIAVLPEEIDGKMGSKVIEKDCILYVSMKPIHIIDRSCRYFGSSYAGRKAGTYEAIKISHKPP
IMVDPSNHIFLFPTLSSARPQCGWISHVHVKDFQPTAFDDTAVTFSNGKTMELEVSYHSFENQVYRTAYLRTTFQDRMGS
HIPKRQEFMLYPKEERTRMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=640877 LXH20_RS05350 WP_003155179.1 1045095..1045673(+) (comK) [Bacillus velezensis strain BR-01]
ATGTGCCAGAAAACACACGCACCCTTAGAAAGCTACGAAGTAAATCGTTCAACCATCGCTGTTTTGCCTGAGGAAATAGA
CGGTAAAATGGGGTCGAAGGTCATTGAAAAAGACTGCATTCTGTATGTCAGCATGAAGCCGATTCACATCATCGACAGAA
GCTGCCGCTACTTTGGCTCCAGCTATGCCGGGAGAAAAGCGGGAACATATGAAGCGATTAAAATTTCTCACAAGCCGCCG
ATTATGGTGGACCCTTCAAATCACATCTTTTTATTCCCTACACTTTCTTCTGCAAGGCCTCAATGCGGCTGGATATCGCA
TGTGCACGTTAAAGATTTTCAACCGACGGCATTTGATGATACAGCGGTCACGTTCTCAAACGGCAAAACGATGGAACTGG
AAGTATCCTATCATTCTTTTGAAAATCAGGTTTACAGAACCGCCTATCTCAGAACCACTTTTCAGGACAGGATGGGCAGC
CATATCCCGAAGCGGCAGGAATTCATGCTGTATCCGAAGGAAGAGCGGACAAGAATGATCTACGACTTTATTTTGCGGGA
GCTGGGGGAGAGATATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G1BIW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

82.292

100

0.823