Detailed information NTG0640868

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: LXH20_RS01955
• Genome accession: NZ_CP090150
• Coordinates: 388510..389658 (+)
• Length: 382 a.a.
• NCBI ID: WP_014304340.1
• Uniprot ID: I2C1C2
• Organism: Bacillus velezensis strain BR-01
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 383510..394658

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXH20_RS01935 (LXH20_01935)	-	383910..384593 (-)	684	WP_022552585.1	ABC transporter ATP-binding protein	-
LXH20_RS01940 (LXH20_01940)	-	384608..386041 (-)	1434	WP_022552586.1	ABC transporter permease	-
LXH20_RS01945 (LXH20_01945)	-	386254..386937 (+)	684	WP_022552587.1	response regulator transcription factor	-
LXH20_RS01950 (LXH20_01950)	-	386924..388351 (+)	1428	WP_089072406.1	sensor histidine kinase	-
LXH20_RS01955 (LXH20_01955)	rapC	388510..389658 (+)	1149	WP_014304340.1	Rap family tetratricopeptide repeat protein	Regulator
LXH20_RS01960 (LXH20_01960)	phrC	389642..389761 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
LXH20_RS01965 (LXH20_01965)	-	389913..390023 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
LXH20_RS01970 (LXH20_01970)	-	390103..391467 (-)	1365	WP_021495117.1	aspartate kinase	-
LXH20_RS01975 (LXH20_01975)	ceuB	391881..392834 (+)	954	WP_014416904.1	ABC transporter permease	Machinery gene
LXH20_RS01980 (LXH20_01980)	-	392824..393771 (+)	948	WP_014416905.1	iron chelate uptake ABC transporter family permease subunit	-
LXH20_RS01985 (LXH20_01985)	-	393765..394523 (+)	759	WP_022552588.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45494.75 Da
• Isoelectric Point: 4.9939

>NTDB_id=640868 LXH20_RS01955 WP_014304340.1 388510..389658(+) (rapC) [Bacillus velezensis strain BR-01]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDRMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=640868 LXH20_RS01955 WP_014304340.1 388510..389658(+) (rapC) [Bacillus velezensis strain BR-01]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAAGCCGAGATCAAACAAGAGCTTGACCGTATGGAGCCTGATTCAAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTATGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAAGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

• Tetratricopeptide repeat (TPR_12) (223-294)

3D structure

• AlphaFold DB: I2C1C2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.199	100	0.822
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568