Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LXD69_RS06420 Genome accession   NZ_CP090145
Coordinates   1419899..1421260 (+) Length   453 a.a.
NCBI ID   WP_246918345.1    Uniprot ID   -
Organism   Flavobacterium sediminilitoris strain YSM-43     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1414899..1426260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXD69_RS06395 (LXD69_06395) - 1415490..1416296 (-) 807 WP_045969916.1 glycogen/starch synthase -
  LXD69_RS06400 (LXD69_06400) panC 1416404..1417249 (+) 846 WP_246918343.1 pantoate--beta-alanine ligase -
  LXD69_RS06405 (LXD69_06405) panD 1417335..1417685 (+) 351 WP_045969912.1 aspartate 1-decarboxylase -
  LXD69_RS06410 (LXD69_06410) - 1417712..1418647 (+) 936 WP_246918344.1 lysylphosphatidylglycerol synthase transmembrane domain-containing protein -
  LXD69_RS06415 (LXD69_06415) - 1418688..1419896 (+) 1209 WP_045969908.1 alpha/beta hydrolase -
  LXD69_RS06420 (LXD69_06420) radA 1419899..1421260 (+) 1362 WP_246918345.1 DNA repair protein RadA Machinery gene
  LXD69_RS06425 (LXD69_06425) - 1421376..1422734 (+) 1359 WP_246918346.1 rhodanese-related sulfurtransferase -
  LXD69_RS06430 (LXD69_06430) - 1422734..1423975 (+) 1242 WP_246918348.1 peptidase U32 family protein -
  LXD69_RS06435 (LXD69_06435) - 1423975..1424205 (+) 231 WP_045969841.1 ferredoxin -
  LXD69_RS06440 (LXD69_06440) - 1424379..1425584 (+) 1206 WP_246918350.1 regulatory iron-sulfur-containing complex subunit RicT -
  LXD69_RS06445 (LXD69_06445) - 1425565..1426056 (+) 492 WP_246918352.1 gliding motility lipoprotein GldH -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49977.59 Da        Isoelectric Point: 6.4017

>NTDB_id=640832 LXD69_RS06420 WP_246918345.1 1419899..1421260(+) (radA) [Flavobacterium sediminilitoris strain YSM-43]
MSKIKTSFFCQNCGTSFSKWQGQCHACKEWNTIVEEVIQKEEKTAWKTASNSVVKAAKPLLIKEIDSSQEIRLNTTDSEL
NRVLGGGLVPGSLTLLGGEPGIGKSTLLLQISLKLPYKTLYVSGEESQKQIKMRAERIMPNSDNCYILTETKTQNIFKQI
QEMQPEIVIIDSIQTLHTDYIESSAGSISQIRECTTELIKFAKETNVPVILIGHITKDGTIAGPKILEHMVDTVLQFEGD
RNHVYRILRSLKNRFGSTAELGIYEMLGNGLREVDNPSEILISHKDEELSGTAIACTLEGMRPLMIEIQSLVSSAVYGTP
QRSTTGYNAKRLNMILAVLEKRAGFRLGTKDVFLNVTGGISVEDTAIDLAVVAAILSSNEDIPIAEGFCFAGEVGLSGEI
RPVNRIDQRIQEAEKLGFTTILVSRHNKLSLKNTKIKVVLVSKIEDVVSELFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=640832 LXD69_RS06420 WP_246918345.1 1419899..1421260(+) (radA) [Flavobacterium sediminilitoris strain YSM-43]
ATGAGTAAAATTAAAACTTCCTTTTTTTGTCAAAATTGTGGCACTTCTTTTTCAAAATGGCAAGGACAATGCCATGCTTG
TAAAGAATGGAATACTATTGTAGAAGAAGTAATTCAAAAGGAAGAAAAAACAGCTTGGAAAACAGCCTCTAACTCTGTTG
TTAAAGCTGCTAAACCATTGCTTATAAAAGAAATTGATAGCTCCCAAGAAATTAGATTAAATACTACAGATAGTGAATTA
AATCGTGTATTAGGAGGAGGCTTAGTTCCTGGATCATTAACTCTTTTAGGAGGTGAACCAGGAATAGGAAAAAGCACACT
TTTACTTCAAATTTCTTTAAAATTACCTTACAAAACACTTTACGTTTCAGGTGAAGAAAGTCAGAAGCAAATTAAAATGC
GCGCTGAACGAATAATGCCAAATAGTGATAATTGCTATATTCTTACTGAAACTAAAACACAGAATATTTTTAAACAAATT
CAGGAGATGCAACCTGAAATTGTTATTATAGATTCTATACAAACTTTGCATACAGATTATATTGAATCTTCAGCGGGTAG
TATTTCTCAAATTAGAGAATGTACTACAGAGCTGATTAAATTTGCTAAAGAAACCAATGTTCCTGTTATTTTAATTGGAC
ATATTACCAAAGACGGAACCATTGCAGGACCAAAAATTTTAGAGCACATGGTAGATACTGTACTACAATTTGAAGGCGAT
CGCAATCACGTATATCGAATTCTCCGTTCTTTAAAAAACAGATTCGGATCAACAGCAGAACTAGGGATTTATGAAATGTT
AGGAAATGGATTAAGAGAAGTAGATAATCCATCTGAAATTTTGATTTCACATAAAGACGAAGAGCTTTCAGGAACAGCTA
TTGCTTGTACTCTTGAAGGCATGCGCCCTTTGATGATAGAGATTCAATCCCTTGTTAGTTCCGCAGTCTATGGAACACCG
CAGCGAAGTACCACAGGGTATAATGCTAAACGACTTAATATGATTTTGGCTGTTCTGGAAAAAAGAGCAGGGTTTAGATT
AGGAACAAAAGATGTTTTTCTAAATGTTACAGGTGGAATTTCTGTAGAAGACACAGCGATTGATTTAGCTGTTGTTGCTG
CAATTCTGTCTTCTAATGAAGACATTCCTATTGCAGAAGGATTTTGCTTTGCTGGTGAAGTTGGACTTTCTGGAGAAATA
AGACCAGTAAATCGTATTGACCAACGCATTCAAGAAGCAGAGAAACTAGGTTTCACAACTATCTTAGTTTCTAGACACAA
CAAACTATCTTTAAAAAACACAAAAATTAAGGTCGTTTTAGTTTCAAAAATTGAAGACGTAGTTAGTGAATTATTTGGAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-35)

Subunit ChlI of Mg-chelatase (ChlI)

(335-427)

AAA domain (AAA_25)

(67-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.359

100

0.488
  radA Streptococcus mitis NCTC 12261

48.132

100

0.483
  radA Streptococcus pneumoniae Rx1

48.132

100

0.483
  radA Streptococcus pneumoniae D39

48.132

100

0.483
  radA Streptococcus pneumoniae R6

48.132

100

0.483
  radA Streptococcus pneumoniae TIGR4

48.132

100

0.483
  radA Streptococcus mitis SK321

47.912

100

0.481