Detailed information NTG0640807

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM50_RS08310
• Genome accession: NZ_CP107126
• Coordinates: 1655369..1656361 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S8
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1650369..1661361

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM50_RS08290 (OGM50_08280)	ygbM	1651007..1651783 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM50_RS08295 (OGM50_08285)	ygbN	1651872..1653236 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM50_RS08300 (OGM50_08290)	-	1653379..1654422 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM50_RS08305 (OGM50_08295)	-	1654647..1655198 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM50_RS08310 (OGM50_08300)	rpoS	1655369..1656361 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM50_RS08315 (OGM50_08305)	nlpD	1656424..1657518 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM50_RS08320 (OGM50_08310)	pcm	1657703..1658329 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM50_RS08325 (OGM50_08315)	surE	1658323..1659084 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM50_RS08330 (OGM50_08320)	truD	1659065..1660114 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM50_RS08335 (OGM50_08325)	ispF	1660111..1660590 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM50_RS08340 (OGM50_08330)	ispD	1660590..1661300 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=640807 OGM50_RS08310 WP_000081550.1 1655369..1656361(-) (rpoS) [Escherichia coli strain S8]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=640807 OGM50_RS08310 WP_000081550.1 1655369..1656361(-) (rpoS) [Escherichia coli strain S8]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715