Detailed information NTG0640753

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM51_RS18115
• Genome accession: NZ_CP107122
• Coordinates: 3672277..3673269 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S9
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3667277..3678269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM51_RS18095 (OGM51_18080)	ygbM	3667915..3668691 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM51_RS18100 (OGM51_18085)	ygbN	3668780..3670144 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM51_RS18105 (OGM51_18090)	-	3670287..3671330 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM51_RS18110 (OGM51_18095)	-	3671555..3672106 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM51_RS18115 (OGM51_18100)	rpoS	3672277..3673269 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM51_RS18120 (OGM51_18105)	nlpD	3673332..3674426 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM51_RS18125 (OGM51_18110)	pcm	3674611..3675237 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM51_RS18130 (OGM51_18115)	surE	3675231..3675992 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM51_RS18135 (OGM51_18120)	truD	3675973..3677022 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM51_RS18140 (OGM51_18125)	ispF	3677019..3677498 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM51_RS18145 (OGM51_18130)	ispD	3677498..3678208 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=640753 OGM51_RS18115 WP_000081550.1 3672277..3673269(-) (rpoS) [Escherichia coli strain S9]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=640753 OGM51_RS18115 WP_000081550.1 3672277..3673269(-) (rpoS) [Escherichia coli strain S9]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715