Detailed information NTG0640733

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: LXE94_RS19560
• Genome accession: NZ_CP090125
• Coordinates: 3672618..3673763 (+)
• Length: 381 a.a.
• NCBI ID: WP_095844025.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain Bs96
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3667618..3678763

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LXE94_RS19540 (LXE94_19490)	albF	3667633..3668913 (+)	1281	WP_129093491.1	pitrilysin family protein	-
LXE94_RS19545 (LXE94_19495)	albG	3668910..3669611 (+)	702	WP_029318695.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
LXE94_RS19550 (LXE94_19500)	ywhL	3669617..3670984 (-)	1368	WP_017696256.1	YncE family protein	-
LXE94_RS19555 (LXE94_19505)	ywhK	3671033..3672388 (-)	1356	WP_095844024.1	YncE family protein	-
LXE94_RS21500	-	3672385..3672615 (-)	231	WP_024572000.1	hypothetical protein	-
LXE94_RS19560 (LXE94_19510)	rapF	3672618..3673763 (+)	1146	WP_095844025.1	tetratricopeptide repeat protein	Regulator
LXE94_RS19565 (LXE94_19515)	-	3673747..3673866 (+)	120	WP_014665774.1	PhrC/PhrF family phosphatase-inhibitory pheromone	-
LXE94_RS19570 (LXE94_19520)	-	3673966..3674431 (+)	466	Protein_3800	YbaK/EbsC family protein	-
LXE94_RS19575 (LXE94_19525)	speB	3674463..3675335 (-)	873	WP_003227545.1	agmatinase	-
LXE94_RS19580 (LXE94_19530)	speE	3675396..3676226 (-)	831	WP_003227543.1	spermidine synthase	-
LXE94_RS19585 (LXE94_19535)	pbpG	3676429..3678504 (+)	2076	WP_257986281.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45579.21 Da
• Isoelectric Point: 5.0684

>NTDB_id=640733 LXE94_RS19560 WP_095844025.1 3672618..3673763(+) (rapF) [Bacillus subtilis strain Bs96]
MSGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDRREYVLAIQFFKKAESKLVFVKDKIDKAEFFFKMSEVYYYMKQTYVS
MDYARQAFEIYSEQTTYDIRMIQCQSLFGANFLDLKQYEKAIAHFQKAFTLAKTEQQPQLMGRTLYNIALCKQNQNSFES
AIEYVKKSIQVFEGSKMLPSLPQAFFLITQIYFKLGKIDNACEYHKKGKEYSAAAGDTVYLTEFEFLESLYLSGPDEERI
EKCFVFLESKMMYADIEDFALDVAKYYHQQENYKKASHYFLKVEEARQHIQGGVNLYEMEV

Nucleotide

• Length: 1146 bp

>NTDB_id=640733 LXE94_RS19560 WP_095844025.1 3672618..3673763(+) (rapF) [Bacillus subtilis strain Bs96]
GTGTCAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAATTTCTTCAG
AGGCATGTATGAGCTGGATCGCCGTGAATATGTATTAGCCATTCAATTCTTTAAAAAAGCTGAGAGCAAGCTGGTTTTTG
TGAAAGATAAAATCGATAAAGCTGAATTCTTTTTCAAAATGTCAGAAGTCTATTATTATATGAAACAAACTTATGTCTCC
ATGGACTATGCACGTCAAGCATTCGAAATATACAGTGAACAGACTACATATGATATCAGAATGATTCAATGCCAGTCCTT
ATTCGGAGCCAACTTTTTGGATTTAAAACAATACGAAAAAGCAATTGCCCATTTTCAAAAAGCCTTTACACTTGCAAAAA
CAGAGCAGCAGCCCCAATTAATGGGAAGAACACTTTATAACATAGCACTCTGCAAGCAAAACCAAAACAGTTTTGAATCA
GCGATAGAGTATGTAAAAAAATCTATTCAAGTATTTGAAGGATCTAAAATGCTTCCTTCATTGCCACAAGCTTTTTTCCT
AATTACACAAATTTATTTTAAATTAGGTAAGATTGATAACGCCTGTGAATATCATAAAAAAGGAAAAGAGTATTCTGCAG
CTGCGGGAGATACCGTGTATCTAACGGAGTTTGAATTTTTGGAATCTTTATACTTGTCTGGACCGGATGAGGAACGGATA
GAAAAATGTTTTGTTTTTCTTGAAAGTAAAATGATGTATGCAGATATTGAGGACTTCGCACTTGATGTTGCTAAATATTA
TCATCAACAGGAAAATTACAAAAAAGCATCTCATTACTTTTTAAAGGTTGAAGAAGCAAGACAGCACATTCAAGGGGGGG
TGAATTTATATGAAATGGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_8) (263-290)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	79.79	100	0.798
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572