Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LXE94_RS14185 Genome accession   NZ_CP090125
Coordinates   2628834..2629580 (-) Length   248 a.a.
NCBI ID   WP_257986111.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2623834..2634580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS14160 (LXE94_14135) mreC 2624240..2625112 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  LXE94_RS14165 (LXE94_14140) mreB 2625143..2626156 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  LXE94_RS14170 (LXE94_14145) radC 2626248..2626943 (-) 696 WP_003246034.1 DNA repair protein RadC -
  LXE94_RS14175 (LXE94_14150) maf 2626980..2627549 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  LXE94_RS14180 (LXE94_14155) spoIIB 2627702..2628700 (-) 999 WP_257986110.1 stage II sporulation protein SpoIIB -
  LXE94_RS14185 (LXE94_14160) comC 2628834..2629580 (-) 747 WP_257986111.1 A24 family peptidase Machinery gene
  LXE94_RS14190 (LXE94_14165) folC 2629726..2631018 (-) 1293 WP_003229640.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LXE94_RS14195 (LXE94_14170) valS 2631078..2633720 (-) 2643 WP_257986702.1 valine--tRNA ligase -
  LXE94_RS14200 (LXE94_14175) - 2634168..2634359 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26439.03 Da        Isoelectric Point: 9.7944

>NTDB_id=640714 LXE94_RS14185 WP_257986111.1 2628834..2629580(-) (comC) [Bacillus subtilis strain Bs96]
MLSLLFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTLAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=640714 LXE94_RS14185 WP_257986111.1 2628834..2629580(-) (comC) [Bacillus subtilis strain Bs96]
ATGCTATCCCTTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGAGGACATTAACTCTTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

98.79

100

0.988