Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LXE94_RS11190 Genome accession   NZ_CP090125
Coordinates   2111188..2111808 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2106188..2116808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS11150 (LXE94_11125) ptsA 2107348..2107854 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  LXE94_RS11155 (LXE94_11130) ypqA 2107992..2108411 (+) 420 WP_257986035.1 Hsp20/alpha crystallin family protein -
  LXE94_RS11160 (LXE94_11135) sppG 2108432..2108809 (-) 378 WP_014477159.1 YppG family protein -
  LXE94_RS11165 (LXE94_11140) yppF 2108996..2109184 (+) 189 WP_003230690.1 YppF family protein -
  LXE94_RS11170 (LXE94_11145) yppE 2109223..2109594 (-) 372 WP_017696991.1 YppE family protein -
  LXE94_RS11175 (LXE94_11150) yppD 2109640..2109885 (-) 246 WP_015251831.1 YppD family protein -
  LXE94_RS11180 (LXE94_11155) sspM 2110084..2110188 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  LXE94_RS11185 (LXE94_11160) yppC 2110221..2111147 (-) 927 WP_257986036.1 DUF2515 domain-containing protein -
  LXE94_RS11190 (LXE94_11165) recU 2111188..2111808 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  LXE94_RS11195 (LXE94_11170) ponA 2111830..2114574 (+) 2745 WP_257986037.1 transglycosylase domain-containing protein -
  LXE94_RS11200 (LXE94_11175) ypoC 2114650..2115144 (-) 495 WP_009967579.1 YpoC family protein -
  LXE94_RS11205 (LXE94_11180) nth 2115141..2115800 (-) 660 WP_009967580.1 endonuclease III -
  LXE94_RS11210 (LXE94_11185) dnaD 2115819..2116517 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=640695 LXE94_RS11190 WP_004399067.1 2111188..2111808(+) (recU) [Bacillus subtilis strain Bs96]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=640695 LXE94_RS11190 WP_004399067.1 2111188..2111808(+) (recU) [Bacillus subtilis strain Bs96]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGACGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1