Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   LXE94_RS10320 Genome accession   NZ_CP090125
Coordinates   1969868..1970998 (+) Length   376 a.a.
NCBI ID   WP_257986672.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1962668..1999864 1969868..1970998 within 0


Gene organization within MGE regions


Location: 1962668..1999864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS10240 (LXE94_10215) - 1962668..1962799 (-) 132 WP_043857647.1 hypothetical protein -
  LXE94_RS10245 (LXE94_10220) - 1962810..1963032 (-) 223 Protein_1966 hypothetical protein -
  LXE94_RS10250 (LXE94_10225) - 1963036..1963287 (-) 252 WP_072176392.1 hypothetical protein -
  LXE94_RS10255 (LXE94_10230) - 1963357..1963536 (+) 180 WP_003231000.1 hypothetical protein -
  LXE94_RS10260 (LXE94_10235) - 1963648..1963878 (+) 231 WP_043857649.1 membrane protein -
  LXE94_RS10265 (LXE94_10240) - 1963888..1964280 (-) 393 WP_072176394.1 UPF0715 family protein -
  LXE94_RS10270 (LXE94_10245) - 1964325..1964546 (-) 222 WP_116315615.1 hypothetical protein -
  LXE94_RS10275 (LXE94_10250) - 1964584..1964802 (-) 219 Protein_1972 hypothetical protein -
  LXE94_RS10280 (LXE94_10255) ynaE 1964849..1965487 (-) 639 WP_257986669.1 DUF3885 domain-containing protein -
  LXE94_RS10285 (LXE94_10260) - 1965681..1965907 (-) 227 Protein_1974 helix-turn-helix domain-containing protein -
  LXE94_RS10290 (LXE94_10265) - 1965999..1966436 (-) 438 WP_046160477.1 hypothetical protein -
  LXE94_RS10295 (LXE94_10270) - 1966527..1966943 (-) 417 WP_257986670.1 UPF0715 family protein -
  LXE94_RS10300 (LXE94_10275) - 1967317..1967682 (+) 366 WP_029318057.1 hypothetical protein -
  LXE94_RS10305 (LXE94_10280) - 1967863..1968157 (+) 295 Protein_1978 SOS response-associated peptidase family protein -
  LXE94_RS10310 (LXE94_10285) - 1968416..1968790 (+) 375 WP_257986671.1 YoqO family protein -
  LXE94_RS21565 (LXE94_10290) - 1969657..1969734 (+) 78 WP_227057947.1 phage holin -
  LXE94_RS10320 (LXE94_10295) rapC 1969868..1970998 (+) 1131 WP_257986672.1 tetratricopeptide repeat protein Regulator
  LXE94_RS10325 (LXE94_10300) - 1970988..1971131 (+) 144 WP_153801665.1 hypothetical protein -
  LXE94_RS10330 (LXE94_10305) - 1971285..1971485 (-) 201 WP_021481449.1 hypothetical protein -
  LXE94_RS10335 (LXE94_10310) - 1971708..1972187 (-) 480 WP_250614804.1 DNA polymerase -
  LXE94_RS10340 (LXE94_10315) - 1972204..1972533 (-) 330 WP_250614805.1 hypothetical protein -
  LXE94_RS10345 (LXE94_10320) - 1972589..1972945 (-) 357 WP_306816895.1 hypothetical protein -
  LXE94_RS10350 (LXE94_10325) - 1972938..1973230 (-) 293 Protein_1987 YolD-like family protein -
  LXE94_RS10355 (LXE94_10330) - 1973394..1973685 (+) 292 Protein_1988 hypothetical protein -
  LXE94_RS10360 (LXE94_10335) - 1973751..1974998 (-) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  LXE94_RS10365 (LXE94_10340) - 1975102..1975461 (-) 360 WP_043857661.1 hypothetical protein -
  LXE94_RS10370 (LXE94_10345) - 1975721..1975804 (+) 84 WP_134819451.1 putative holin-like toxin -
  LXE94_RS10375 (LXE94_10350) yokL 1976093..1976626 (-) 534 WP_257986673.1 GNAT family N-acetyltransferase -
  LXE94_RS10380 (LXE94_10355) - 1976686..1977254 (-) 569 Protein_1993 SMI1/KNR4 family protein -
  LXE94_RS10385 (LXE94_10360) - 1977310..1977768 (-) 459 WP_014479998.1 YrhA family protein -
  LXE94_RS10390 (LXE94_10365) - 1977781..1979650 (-) 1870 Protein_1995 T7SS effector LXG polymorphic toxin -
  LXE94_RS10395 (LXE94_10370) yobM 1979750..1980307 (-) 558 WP_141556159.1 SMI1/KNR4 family protein -
  LXE94_RS10400 (LXE94_10375) aoxN 1980435..1981856 (+) 1422 WP_257986674.1 flavin monoamine oxidase family protein -
  LXE94_RS10405 (LXE94_10380) csaA 1982104..1982436 (-) 333 WP_017697558.1 chaperone CsaA -
  LXE94_RS10410 (LXE94_10385) yobQ 1982501..1983226 (-) 726 WP_080316886.1 helix-turn-helix domain-containing protein -
  LXE94_RS10415 (LXE94_10390) yobR 1983241..1983984 (-) 744 WP_041351142.1 N-acetyltransferase -
  LXE94_RS10420 (LXE94_10395) yobS 1984062..1984637 (-) 576 WP_017697555.1 TetR/AcrR family transcriptional regulator -
  LXE94_RS10425 (LXE94_10400) yobT 1984643..1985344 (-) 702 WP_017697554.1 MBL fold metallo-hydrolase -
  LXE94_RS10430 (LXE94_10405) yobU 1985421..1985903 (-) 483 WP_014480008.1 GyrI-like domain-containing protein -
  LXE94_RS10435 (LXE94_10410) yobV 1985957..1986898 (-) 942 WP_131227507.1 YafY family protein -
  LXE94_RS10440 (LXE94_10415) csk22 1987105..1987650 (+) 546 WP_015251914.1 mother cell-specific sporulation protein Csk22 -
  LXE94_RS10445 (LXE94_10420) czrA 1987677..1988000 (-) 324 WP_003231284.1 Zn(II)-responsive metalloregulatory transcriptional repressor CzrA -
  LXE94_RS10450 (LXE94_10425) yocA 1988194..1988871 (+) 678 WP_003231283.1 lysozyme family protein -
  LXE94_RS10455 (LXE94_10430) ctaM 1988961..1989497 (-) 537 WP_003231280.1 DUF420 domain-containing protein -
  LXE94_RS10460 (LXE94_10435) yocB 1989634..1990416 (-) 783 WP_024573290.1 VLRF1 family aeRF1-type release factor -
  LXE94_RS10465 (LXE94_10440) yocC 1990587..1991084 (+) 498 WP_024573291.1 N-acetyltransferase -
  LXE94_RS10470 (LXE94_10445) yocD 1991148..1992125 (+) 978 WP_041333663.1 S66 peptidase family protein -
  LXE94_RS10475 (LXE94_10450) desE 1992287..1993345 (+) 1059 WP_029726828.1 fatty acid desaturase DesE -
  LXE94_RS10480 (LXE94_10455) desK 1993465..1994577 (+) 1113 WP_015251908.1 two-component sensor histidine kinase DesK -
  LXE94_RS10485 (LXE94_10460) desR 1994596..1995195 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  LXE94_RS10490 (LXE94_10465) walN 1995800..1996663 (-) 864 WP_003231267.1 LysM peptidoglycan-binding and 3D domain-containing protein -
  LXE94_RS10495 (LXE94_10470) recQ 1996903..1998678 (-) 1776 WP_017697166.1 DNA helicase RecQ -
  LXE94_RS10505 (LXE94_10480) azoJ 1999238..1999864 (-) 627 WP_257986675.1 FMN-dependent NADH-azoreductase AzoJ -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44394.15 Da        Isoelectric Point: 5.7041

>NTDB_id=640694 LXE94_RS10320 WP_257986672.1 1969868..1970998(+) (rapC) [Bacillus subtilis strain Bs96]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLEDNVMYPDLEKLALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=640694 LXE94_RS10320 WP_257986672.1 1969868..1970998(+) (rapC) [Bacillus subtilis strain Bs96]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTGAAGATAATGTAATGTATCCAGATTTAGAGAAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457