Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   LXE94_RS06210 Genome accession   NZ_CP090125
Coordinates   1197457..1198410 (+) Length   317 a.a.
NCBI ID   WP_041340417.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1192457..1203410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS06185 (LXE94_06175) argF 1194288..1195247 (+) 960 WP_095843628.1 ornithine carbamoyltransferase -
  LXE94_RS06190 (LXE94_06180) yjzC 1195333..1195512 (+) 180 WP_003245356.1 YjzC family protein -
  LXE94_RS06195 (LXE94_06185) yjzD 1195559..1195744 (-) 186 WP_003245236.1 YjzD family protein -
  LXE94_RS06200 (LXE94_06190) - 1195993..1196727 (+) 735 WP_041340422.1 hypothetical protein -
  LXE94_RS06205 (LXE94_06195) - 1196809..1197366 (+) 558 WP_017695676.1 hypothetical protein -
  LXE94_RS06210 (LXE94_06200) med 1197457..1198410 (+) 954 WP_041340417.1 transcriptional regulator Med Regulator
  LXE94_RS06215 (LXE94_06205) comZ 1198425..1198616 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  LXE94_RS06220 (LXE94_06210) yjzB 1198646..1198885 (-) 240 WP_003232972.1 spore coat protein YjzB -
  LXE94_RS06225 (LXE94_06215) fabH 1199050..1199988 (+) 939 WP_003232971.1 beta-ketoacyl-ACP synthase III -
  LXE94_RS06230 (LXE94_06220) fabF 1200011..1201252 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  LXE94_RS06235 (LXE94_06225) yjaZ 1201328..1202113 (+) 786 WP_017695678.1 DUF2268 domain-containing protein -
  LXE94_RS06240 (LXE94_06230) appD 1202305..1203291 (+) 987 WP_003232965.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35282.79 Da        Isoelectric Point: 4.6031

>NTDB_id=640678 LXE94_RS06210 WP_041340417.1 1197457..1198410(+) (med) [Bacillus subtilis strain Bs96]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIVNAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKSNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=640678 LXE94_RS06210 WP_041340417.1 1197457..1198410(+) (med) [Bacillus subtilis strain Bs96]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCGTAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGTAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGTGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAATCGAATCAGGTCGGTGTAATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGTTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAATAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.054

100

0.991