Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LXE94_RS05720 Genome accession   NZ_CP090125
Coordinates   1104748..1105326 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain Bs96     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1099748..1110326
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS21520 - 1100267..1100782 (-) 516 WP_372553879.1 methyl-accepting chemotaxis protein -
  LXE94_RS21525 - 1101023..1101649 (-) 627 Protein_1056 protoglobin domain-containing protein -
  LXE94_RS05705 (LXE94_05695) comW 1101704..1103233 (-) 1530 Protein_1057 FAD-dependent oxidoreductase -
  LXE94_RS05710 (LXE94_05700) yhxC 1103337..1104194 (+) 858 WP_257986518.1 SDR family oxidoreductase -
  LXE94_RS05715 (LXE94_05705) yhzC 1104222..1104455 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  LXE94_RS05720 (LXE94_05710) comK 1104748..1105326 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  LXE94_RS05725 (LXE94_05715) yhxD 1105372..1106271 (-) 900 WP_043857240.1 SDR family oxidoreductase -
  LXE94_RS05730 (LXE94_05720) yhjA 1106488..1106757 (+) 270 WP_021479615.1 excalibur calcium-binding domain-containing protein -
  LXE94_RS05735 (LXE94_05725) yhjB 1106801..1108270 (-) 1470 WP_003233134.1 sodium:solute symporter -
  LXE94_RS05740 (LXE94_05730) yhjC 1108267..1108467 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  LXE94_RS05745 (LXE94_05735) - 1108666..1109037 (-) 372 WP_014476361.1 hypothetical protein -
  LXE94_RS05750 (LXE94_05740) yhjE 1109189..1109812 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  LXE94_RS05755 (LXE94_05745) lepB 1109814..1110320 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=640675 LXE94_RS05720 WP_003245329.1 1104748..1105326(+) (comK) [Bacillus subtilis strain Bs96]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=640675 LXE94_RS05720 WP_003245329.1 1104748..1105326(+) (comK) [Bacillus subtilis strain Bs96]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATATGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1