Detailed information NTG0640639

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM52_RS05980
• Genome accession: NZ_CP107120
• Coordinates: 1244277..1245269 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S12
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1239277..1250269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM52_RS05950 (OGM52_05940)	ispD	1239338..1240048 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OGM52_RS05955 (OGM52_05945)	ispF	1240048..1240527 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM52_RS05960 (OGM52_05950)	truD	1240524..1241573 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM52_RS05965 (OGM52_05955)	surE	1241554..1242315 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM52_RS05970 (OGM52_05960)	pcm	1242309..1242935 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM52_RS05975 (OGM52_05965)	nlpD	1243120..1244214 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM52_RS05980 (OGM52_05970)	rpoS	1244277..1245269 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM52_RS05985 (OGM52_05975)	-	1245440..1245991 (-)	552	WP_001179444.1	flavodoxin family protein	-
OGM52_RS05990 (OGM52_05980)	-	1246216..1247259 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM52_RS05995 (OGM52_05985)	ygbN	1247402..1248766 (-)	1365	WP_000104433.1	GntP family transporter	-
OGM52_RS06000 (OGM52_05990)	ygbM	1248855..1249631 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=640639 OGM52_RS05980 WP_000081550.1 1244277..1245269(+) (rpoS) [Escherichia coli strain S12]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=640639 OGM52_RS05980 WP_000081550.1 1244277..1245269(+) (rpoS) [Escherichia coli strain S12]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715