Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LW858_RS26800 Genome accession   NZ_CP090081
Coordinates   5186968..5188095 (-) Length   375 a.a.
NCBI ID   WP_000470745.1    Uniprot ID   A0A9W5QA17
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5181968..5193095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS26790 (LW858_26790) gyrA 5182447..5184918 (-) 2472 WP_001282864.1 DNA gyrase subunit A -
  LW858_RS26795 (LW858_26795) gyrB 5185007..5186929 (-) 1923 WP_000435982.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LW858_RS26800 (LW858_26800) recF 5186968..5188095 (-) 1128 WP_000470745.1 DNA replication/repair protein RecF Machinery gene
  LW858_RS26805 (LW858_26805) yaaA 5188108..5188320 (-) 213 WP_000821364.1 S4 domain-containing protein YaaA -
  LW858_RS26810 (LW858_26810) dnaN 5188448..5189593 (-) 1146 WP_001212884.1 DNA polymerase III subunit beta -
  LW858_RS26815 (LW858_26815) dnaA 5189772..5191112 (-) 1341 WP_000428017.1 chromosomal replication initiator protein DnaA -
  LW858_RS26820 (LW858_26820) rpmH 5191677..5191811 (+) 135 WP_000831901.1 50S ribosomal protein L34 -
  LW858_RS26825 (LW858_26825) rnpA 5191888..5192235 (+) 348 WP_000726619.1 ribonuclease P protein component -
  LW858_RS26830 (LW858_26830) spoIIIJ 5192288..5193064 (+) 777 WP_000727734.1 YidC family membrane integrase SpoIIIJ -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 43362.67 Da        Isoelectric Point: 6.6001

>NTDB_id=640627 LW858_RS26800 WP_000470745.1 5186968..5188095(-) (recF) [Bacillus cereus strain CPT56D-587-MTF]
MFISEIQLKNYRNYEKLELSFEDKVNVIIGENAQGKTNLMEAIYVLAMAKSHRTSNDRELIRWDEDFGQIKGKLQKRNSS
LSLELNISKKGKKAKLNQLEQQKLSQYIGVMNVVMFAPEDLNLVKGSPQVRRRFLDMELGQIAPVYLYELSQYQKVLTQR
NHLLKKMQGNSKNEETMLDVFTLQLIEHGAKILQKRFEFLHLLQEWAAPIHRGISRGLEELEIVYKPSVDVSESMDLSKI
KEVYYESFQSVKQREIFRGTTLIGPHRDDLQFFVNSKNVQVFGSQGQQRTTALSLKLAEIELIYSEVKEYPILLLDDVLS
ELDDYRQSHLLNTIQGKVQTFVTTTSVDGIEHETLKEAKTIHVTNGTVDCEIDRE

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=640627 LW858_RS26800 WP_000470745.1 5186968..5188095(-) (recF) [Bacillus cereus strain CPT56D-587-MTF]
TTGTTTATTTCAGAAATACAATTAAAAAACTATCGCAATTATGAAAAATTAGAGCTTTCCTTTGAAGATAAGGTAAATGT
AATTATCGGCGAAAATGCGCAAGGGAAAACAAATTTGATGGAAGCTATTTATGTTTTAGCGATGGCGAAATCTCATAGAA
CCTCTAATGATCGCGAACTTATCCGCTGGGATGAAGATTTTGGTCAAATAAAAGGGAAATTACAAAAAAGAAACAGTTCT
TTGTCTTTGGAATTAAATATTTCGAAAAAAGGTAAAAAGGCAAAATTAAATCAACTTGAACAGCAAAAGTTAAGTCAATA
TATTGGCGTGATGAACGTTGTCATGTTTGCCCCAGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTAAGAAGACGCT
TTTTAGATATGGAATTAGGACAAATAGCTCCTGTATATTTGTATGAATTAAGTCAATATCAAAAGGTGCTCACGCAACGA
AATCACTTGTTGAAAAAAATGCAAGGGAATAGTAAGAATGAGGAAACGATGTTGGATGTATTTACACTTCAACTAATTGA
GCATGGTGCGAAAATACTGCAAAAACGTTTTGAATTTTTGCATTTGCTACAGGAATGGGCAGCTCCAATTCATCGAGGTA
TAAGCCGTGGATTAGAAGAGTTAGAAATTGTCTATAAACCAAGTGTAGATGTATCAGAATCAATGGATTTGTCGAAAATA
AAAGAAGTATACTATGAAAGTTTTCAATCTGTGAAACAACGTGAAATTTTCCGTGGTACGACTTTAATTGGTCCTCATCG
TGACGATTTACAATTCTTCGTTAATAGTAAAAATGTTCAAGTCTTTGGTTCGCAAGGACAACAACGAACGACCGCACTAT
CCCTAAAATTAGCTGAAATTGAATTGATTTATTCAGAGGTTAAAGAATATCCAATCCTTTTGTTGGATGATGTTTTATCA
GAATTAGATGATTATCGTCAATCACATCTTTTAAATACAATTCAAGGAAAAGTGCAAACATTTGTTACAACGACGAGTGT
CGACGGAATTGAACACGAAACATTAAAAGAAGCGAAAACAATTCATGTAACGAACGGCACTGTAGATTGTGAAATAGATA
GGGAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

66.576

98.133

0.653