Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LW858_RS26595 Genome accession   NZ_CP090081
Coordinates   5148908..5149192 (+) Length   94 a.a.
NCBI ID   WP_000843036.1    Uniprot ID   A0A9W5VII1
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 5143908..5154192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS26580 (LW858_26580) rnmV 5144734..5145291 (-) 558 WP_000692835.1 ribonuclease M5 -
  LW858_RS26585 (LW858_26585) - 5145506..5146273 (-) 768 WP_000895851.1 TatD family hydrolase -
  LW858_RS26590 (LW858_26590) metG 5146440..5148422 (-) 1983 WP_233935675.1 methionine--tRNA ligase -
  LW858_RS26595 (LW858_26595) abrB 5148908..5149192 (+) 285 WP_000843036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LW858_RS26600 (LW858_26600) rsmI 5149213..5150088 (-) 876 WP_000267821.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LW858_RS26605 (LW858_26605) - 5150057..5150347 (-) 291 WP_000414350.1 GIY-YIG nuclease family protein -
  LW858_RS26610 (LW858_26610) - 5150334..5151074 (-) 741 WP_001055366.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LW858_RS26615 (LW858_26615) yabA 5151157..5151507 (-) 351 WP_000412063.1 DNA replication initiation control protein YabA -
  LW858_RS26620 (LW858_26620) - 5151522..5152349 (-) 828 WP_000272429.1 stage 0 sporulation family protein -
  LW858_RS26625 (LW858_26625) holB 5152355..5153338 (-) 984 WP_000169561.1 DNA polymerase III subunit delta' -
  LW858_RS26630 (LW858_26630) tmk 5153374..5154000 (-) 627 WP_000677216.1 dTMP kinase -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10490.17 Da        Isoelectric Point: 4.7174

>NTDB_id=640625 LW858_RS26595 WP_000843036.1 5148908..5149192(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDGNLSLAEGKIILSKEGAE
QILNELQDYIETAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=640625 LW858_RS26595 WP_000843036.1 5148908..5149192(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGTGTAGTAATTCCAATCGAATTACGCCGTACTTTAGG
TATTGCAGAAAAGGACGCTCTTGAAATCTATGTTGATGACGAAAAAATCATCTTAAAGAAATATAAACCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACGGTAACCTTTCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCTGAG
CAAATCTTAAACGAACTTCAAGATTATATCGAAACAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851