Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LW858_RS10805 Genome accession   NZ_CP090081
Coordinates   2107388..2107666 (+) Length   92 a.a.
NCBI ID   WP_233936362.1    Uniprot ID   -
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2102388..2112666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS10785 (LW858_10785) - 2104062..2104871 (+) 810 WP_233936360.1 papain-like cysteine protease family protein -
  LW858_RS10790 (LW858_10790) - 2104897..2105499 (+) 603 WP_233936361.1 hypothetical protein -
  LW858_RS10795 (LW858_10795) - 2105743..2105994 (-) 252 WP_000827560.1 LuxR C-terminal-related transcriptional regulator -
  LW858_RS10800 (LW858_10800) - 2106369..2107247 (+) 879 WP_000397979.1 helix-turn-helix domain-containing protein -
  LW858_RS10805 (LW858_10805) abrB 2107388..2107666 (+) 279 WP_233936362.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LW858_RS10810 (LW858_10810) - 2108213..2109463 (+) 1251 WP_001032358.1 hypothetical protein -
  LW858_RS10815 (LW858_10815) - 2109531..2110289 (+) 759 WP_000347994.1 TSUP family transporter -
  LW858_RS10820 (LW858_10820) - 2110543..2111202 (+) 660 WP_227077892.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10348.25 Da        Isoelectric Point: 10.0092

>NTDB_id=640601 LW858_RS10805 WP_233936362.1 2107388..2107666(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
MKSRGITRKADSMGRIVIPMEIRRGLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPNGME
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=640601 LW858_RS10805 WP_233936362.1 2107388..2107666(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
ATGAAATCAAGAGGAATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGGGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGACCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGGGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAAACGGGATGGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

50

97.826

0.489