Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   X809_RS23350 Genome accession   NC_023037
Coordinates   5289528..5290901 (-) Length   457 a.a.
NCBI ID   WP_023990571.1    Uniprot ID   A0AAP4A7I7
Organism   Paenibacillus polymyxa CR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5284528..5295901
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X809_RS23325 (X809_39035) ispF 5285117..5285593 (-) 477 WP_023990567.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  X809_RS23330 (X809_39040) ispD 5285590..5286288 (-) 699 WP_023990568.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  X809_RS23335 (X809_39045) - 5286359..5287444 (-) 1086 WP_023990569.1 PIN/TRAM domain-containing protein -
  X809_RS23340 (X809_39050) pssA 5287638..5288384 (-) 747 WP_023990570.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  X809_RS23345 (X809_39055) disA 5288439..5289515 (-) 1077 WP_013373290.1 DNA integrity scanning diadenylate cyclase DisA -
  X809_RS23350 (X809_39060) radA 5289528..5290901 (-) 1374 WP_023990571.1 DNA repair protein RadA Machinery gene
  X809_RS23355 (X809_39065) clpC 5291142..5293586 (-) 2445 WP_023990572.1 ATP-dependent protease ATP-binding subunit ClpC -
  X809_RS23360 (X809_39070) - 5293631..5294695 (-) 1065 WP_023990573.1 protein arginine kinase -
  X809_RS23365 (X809_39075) - 5294724..5295248 (-) 525 WP_023990574.1 UvrB/UvrC motif-containing protein -
  X809_RS23370 (X809_39080) - 5295318..5295782 (-) 465 WP_013312188.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49234.88 Da        Isoelectric Point: 6.7620

>NTDB_id=64060 X809_RS23350 WP_023990571.1 5289528..5290901(-) (radA) [Paenibacillus polymyxa CR1]
MAKVKTKFSCTECGYESPKWYGKCPGCQAWNSMVEETESVVKTQGMGSSLLTHSTKDKPLSIIEVESGKETRILTGIGEL
NRVLGGGVVPGSLVLVGGDPGIGKSTLMLQTSNELALTGLKVLYVSGEESVRQTKLRADRLGALSPSLYVLCETNLETIE
EAVDSLKPEFLVIDSIQTVYLPEVTSAPGSVAQVRECTSRFMRIAKGLGIATVLVGHVTKEGAIAGPRLLEHMVDCVLYF
EGERHHTYRLLRAVKNRFGSTNEIGIFEMAESGLREVSNPSELFLSERPLGVAGSTVVASMEGTRPVLVELQALIAATHF
PSPRRMGTGVDHHRMGLIIAVLEKRMGMFLQNQDAYLNVAGGVKLDEPAVDLAIAVSIASSFRDAPTKPYDVIFGEVGLT
GEVRAVSRAEQRVREAEKLGFKRVIMPEKSLKGWTHPKGIQIIGVGTVADALAAALD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=64060 X809_RS23350 WP_023990571.1 5289528..5290901(-) (radA) [Paenibacillus polymyxa CR1]
ATGGCTAAAGTGAAAACTAAATTTTCCTGTACGGAATGTGGTTATGAATCGCCCAAATGGTACGGAAAATGTCCTGGATG
CCAGGCATGGAATTCCATGGTCGAAGAAACGGAAAGCGTTGTAAAAACTCAAGGAATGGGGTCTTCCCTTCTTACTCATA
GCACAAAAGACAAGCCACTCTCTATTATAGAGGTGGAGAGTGGCAAAGAAACACGAATTTTGACGGGAATTGGCGAATTG
AATCGAGTACTCGGTGGAGGTGTGGTGCCGGGTTCACTCGTTTTGGTGGGCGGTGATCCGGGAATCGGTAAATCTACGCT
TATGCTGCAAACATCTAATGAGCTGGCTTTAACTGGTTTAAAGGTGCTGTACGTGTCTGGTGAGGAATCTGTCCGTCAAA
CGAAACTACGTGCAGATCGGCTCGGTGCCTTGTCCCCCAGCCTATACGTATTATGTGAGACGAATTTGGAGACGATTGAA
GAAGCGGTGGACAGCTTGAAGCCGGAGTTTTTGGTCATCGACTCGATACAGACCGTATATTTGCCTGAGGTGACGAGTGC
ACCAGGTAGTGTGGCTCAGGTGCGGGAGTGTACTTCACGCTTTATGCGAATTGCCAAGGGGCTAGGTATTGCTACGGTAT
TGGTAGGACATGTGACCAAGGAAGGGGCCATTGCAGGTCCACGTTTGTTGGAACATATGGTTGATTGTGTGCTTTATTTT
GAAGGAGAGCGTCATCATACGTATCGGCTTTTGCGTGCAGTTAAAAACCGTTTCGGTTCTACAAATGAAATTGGTATTTT
TGAAATGGCTGAAAGCGGTTTGCGTGAGGTGTCAAATCCTTCTGAACTATTCCTGTCTGAACGACCACTGGGGGTAGCGG
GTTCTACTGTTGTAGCCAGTATGGAAGGAACCCGACCTGTATTGGTTGAACTGCAAGCATTGATTGCAGCTACGCATTTT
CCATCTCCGCGCCGAATGGGCACAGGAGTCGATCATCATCGAATGGGATTAATCATAGCCGTGCTAGAAAAGCGGATGGG
CATGTTTTTGCAAAACCAGGACGCCTATCTCAACGTAGCTGGAGGCGTGAAGTTGGATGAACCGGCGGTGGATTTGGCTA
TAGCTGTGAGCATTGCTTCCAGCTTTAGGGATGCTCCTACCAAGCCGTACGACGTGATTTTTGGCGAGGTGGGACTGACA
GGTGAGGTACGTGCGGTATCCCGAGCAGAACAGCGAGTACGGGAAGCGGAGAAACTAGGTTTCAAACGGGTGATCATGCC
GGAGAAAAGCTTGAAGGGCTGGACACATCCGAAAGGGATTCAAATTATAGGAGTAGGAACGGTGGCAGATGCACTGGCAG
CCGCATTAGATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(349-429)

AAA domain (AAA_25)

(79-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.812

100

0.67
  radA Streptococcus pneumoniae Rx1

58.85

98.906

0.582
  radA Streptococcus pneumoniae D39

58.85

98.906

0.582
  radA Streptococcus pneumoniae R6

58.85

98.906

0.582
  radA Streptococcus pneumoniae TIGR4

58.85

98.906

0.582
  radA Streptococcus mitis NCTC 12261

58.85

98.906

0.582
  radA Streptococcus mitis SK321

58.628

98.906

0.58

Multiple sequence alignment