Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LW858_RS08535 Genome accession   NZ_CP090081
Coordinates   1661008..1661295 (+) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656008..1666295
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS08515 (LW858_08515) - 1657187..1657384 (+) 198 WP_001048104.1 DUF4083 domain-containing protein -
  LW858_RS08520 (LW858_08520) - 1657416..1657877 (+) 462 WP_000024992.1 NUDIX hydrolase -
  LW858_RS08525 (LW858_08525) nadE 1657927..1658745 (-) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  LW858_RS08530 (LW858_08530) - 1659016..1660891 (+) 1876 Protein_1666 ABC transporter permease -
  LW858_RS08535 (LW858_08535) abrB 1661008..1661295 (+) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  LW858_RS08540 (LW858_08540) - 1661571..1662518 (+) 948 WP_227077862.1 S8 family peptidase -
  LW858_RS08545 (LW858_08545) ugpC 1662719..1663822 (-) 1104 WP_065211669.1 sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC -
  LW858_RS08550 (LW858_08550) - 1664100..1664963 (-) 864 WP_065211668.1 helix-turn-helix domain-containing protein -
  LW858_RS08555 (LW858_08555) - 1665033..1665893 (-) 861 WP_065211667.1 AraC family transcriptional regulator -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=640598 LW858_RS08535 WP_000648324.1 1661008..1661295(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=640598 LW858_RS08535 WP_000648324.1 1661008..1661295(+) (abrB) [Bacillus cereus strain CPT56D-587-MTF]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526