Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   LW858_RS05200 Genome accession   NZ_CP090081
Coordinates   1003978..1004301 (-) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 998978..1009301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS05175 (LW858_05175) - 999256..1000542 (+) 1287 WP_233936152.1 D-alanyl-D-alanine carboxypeptidase family protein -
  LW858_RS05180 (LW858_05180) - 1000733..1001302 (+) 570 WP_000767792.1 signal peptidase I -
  LW858_RS05185 (LW858_05185) - 1001363..1001950 (+) 588 WP_000172852.1 CalY family protein -
  LW858_RS05190 (LW858_05190) - 1002085..1002927 (+) 843 WP_233936154.1 DUF4047 domain-containing protein -
  LW858_RS05195 (LW858_05195) calY 1003312..1003905 (+) 594 WP_000053713.1 biofilm matrix protein CalY -
  LW858_RS05200 (LW858_05200) sinR 1003978..1004301 (-) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  LW858_RS05205 (LW858_05205) - 1004381..1004515 (-) 135 WP_000276219.1 anti-repressor SinI family protein -
  LW858_RS05210 (LW858_05210) inhA1 1004858..1007248 (+) 2391 WP_233936156.1 M6 family metalloprotease immune inhibitor InhA1 -
  LW858_RS05215 (LW858_05215) - 1007420..1008787 (+) 1368 WP_233936158.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=640595 LW858_RS05200 WP_000578885.1 1003978..1004301(-) (sinR) [Bacillus cereus strain CPT56D-587-MTF]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=640595 LW858_RS05200 WP_000578885.1 1003978..1004301(-) (sinR) [Bacillus cereus strain CPT56D-587-MTF]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692