Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LW858_RS04545 Genome accession   NZ_CP090081
Coordinates   886390..888216 (+) Length   608 a.a.
NCBI ID   WP_233936093.1    Uniprot ID   -
Organism   Bacillus cereus strain CPT56D-587-MTF     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 881390..893216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW858_RS04525 (LW858_04525) - 881694..882368 (-) 675 WP_000362607.1 TerC family protein -
  LW858_RS04530 (LW858_04530) mecA 882714..883397 (+) 684 WP_233936088.1 adaptor protein MecA Regulator
  LW858_RS04535 (LW858_04535) - 883470..885014 (+) 1545 WP_233936090.1 cardiolipin synthase -
  LW858_RS04540 (LW858_04540) - 885095..886339 (+) 1245 WP_233936091.1 competence protein CoiA family protein -
  LW858_RS04545 (LW858_04545) pepF 886390..888216 (+) 1827 WP_233936093.1 oligoendopeptidase F Regulator
  LW858_RS04550 (LW858_04550) - 888346..888519 (-) 174 WP_000750355.1 hypothetical protein -
  LW858_RS04555 (LW858_04555) - 888749..889642 (-) 894 WP_000360645.1 ClpXP adapter SpxH family protein -
  LW858_RS04560 (LW858_04560) - 889642..890040 (-) 399 WP_000043390.1 hypothetical protein -
  LW858_RS04565 (LW858_04565) - 890209..890787 (-) 579 WP_000191116.1 CYTH domain-containing protein -
  LW858_RS04570 (LW858_04570) - 890932..891303 (+) 372 WP_001180003.1 hypothetical protein -
  LW858_RS04575 (LW858_04575) - 891351..892511 (-) 1161 WP_061656786.1 site-specific integrase -
  LW858_RS04580 (LW858_04580) - 892579..893004 (-) 426 WP_065481962.1 ImmA/IrrE family metallo-endopeptidase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70211.62 Da        Isoelectric Point: 4.6443

>NTDB_id=640594 LW858_RS04545 WP_233936093.1 886390..888216(+) (pepF) [Bacillus cereus strain CPT56D-587-MTF]
MSEQNKAKALPDRNEIEEASTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSADNLLEALQYEDEISMRLGKLY
TYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEA
EEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEIEITHGRYIQFLESDDPRVRKDAFKAVYETYGKFKNTFAST
LSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVETVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKM
NVKYEEAQDLLLKSLNVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGINPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQ
EGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEF
LKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=640594 LW858_RS04545 WP_233936093.1 886390..888216(+) (pepF) [Bacillus cereus strain CPT56D-587-MTF]
ATGTCTGAACAAAACAAAGCGAAAGCATTACCAGATCGCAACGAGATTGAAGAAGCAAGTACGTGGCGATTAGAAGATAT
TTTCCAAACGGATGCAGAATGGGAAAAAGAATTCCAAGCTATTAAAGAGCTATTACCGAAGTTAACTGAATTTAAAGGGA
AACTTGGGGACTCTGCGGACAATTTACTTGAGGCATTGCAATATGAAGATGAAATATCAATGCGATTAGGTAAGTTATAT
ACATATGCTCATATGCGTTACGATCAAGATACAACAAACTCTGTATATCAAGCATTAAATGATCGTGCAACAAATTTATA
TTCACAAGTATCTAGTAGCACAGCGTATATTGTGCCTGAAATTTTATCGATTTCAGAAGATACATTGCAAACATTCTTGA
AGGAAAATAGAGATTTAAGTGTATATGAACATGCATTAGAAGAAATTACACGTCAACGCCCGCACGTATTATCAGAGGCT
GAGGAAGCTTTATTAGCGGAAGCATCTGAAGTAATGAGTTCATCAAGCAATACATTCGGTATGTTGAATAACGCGGATTT
AAAATTCCCATCTATTAAAGGGGAAGACGGAGAAGAAATAGAAATTACACATGGCCGTTACATTCAGTTTTTAGAAAGTG
ATGATCCTCGTGTTCGCAAAGATGCATTTAAAGCTGTATATGAAACATACGGGAAATTTAAAAACACATTCGCAAGTACG
TTAAGCGGAGCAGTAAAACGTAATAATTTCAATGCGCGTGTTCGTAAATATGATTCTGCTCGCCAAGCTGCACTGAGCAA
TAATAATATTCCGGAAGCAGTATACGATCAACTCGTTGAAACAGTAAATGACAACTTACATTTATTACACCGTTACATCG
ATATTCGTAAGCGTGCACTAGGACTTGATGAGCTTCATATGTATGATTTATATACACCACTTGTACCAGAAGTGAAAATG
AATGTGAAATACGAAGAAGCGCAAGACCTTTTATTAAAATCTTTAAACGTACTTGGTGATGAATATGTTGATATTTTGAA
AGAGGCATATGAAAATCGCTGGGTAGATGTGTATGAGAATAAAGGAAAACGAAGCGGGGCATATTCATCTGGTGCATATG
GAATAAATCCGTATATTTTAATGAACTGGCATGATAATGTAAATAATTTATTTACACTTGCTCATGAGTTTGGTCATTCG
GTGCATAGTTACTATACAAGAAAAACACAACCGCACGTATATGGTGATTATTCCATCTTCGTAGCAGAAGTGGCATCTAC
TTGTAATGAAGCGCTTCTAAATGATTATTTATTAAAAACGACAGAAGATAAGAAAGAGCGTCTATATTTATTAAATCATT
ATTTAGAAGGGTTCCGTGGTACTGTATTCCGTCAAACGATGTTTGCAGAGTTTGAACATATTATTCATAAGAAAGTACAA
GAAGGACATGCTGTTACGCCAGACATGTTAACGGAAATTTACTATGATTTAAATAAAAAATATTTCGGTGACGCTTTAGT
AATCGACGAAGAAATTGGTTTAGAATGGTCTCGTATTCCACACTTCTACTACAACTATTACGTATATCAATATGCAACAG
GATTTAGTGCAGCGACAGCTCTATCTAAACAGATTTTAGAAGAAGGACAACCAGCAGTAGAACGTTATATTAATGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTACTGAAAAAAGCAGGAGTAGATATGGCATCTCCTGAACCAGTAAA
AGAGGCGCTACAAGTATTTGAAGAGAAATTAAATGAATTAGAAGCATTATTATTTGAAGAAAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.916

97.533

0.487