Detailed information NTG0640584

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OGM53_RS19045
• Genome accession: NZ_CP107117
• Coordinates: 3806129..3807121 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain S13
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3801129..3812121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OGM53_RS19025 (OGM53_19005)	ygbM	3801767..3802543 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
OGM53_RS19030 (OGM53_19010)	ygbN	3802632..3803996 (+)	1365	WP_000104433.1	GntP family transporter	-
OGM53_RS19035 (OGM53_19015)	-	3804139..3805182 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
OGM53_RS19040 (OGM53_19020)	-	3805407..3805958 (+)	552	WP_001179444.1	flavodoxin family protein	-
OGM53_RS19045 (OGM53_19025)	rpoS	3806129..3807121 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
OGM53_RS19050 (OGM53_19030)	nlpD	3807184..3808278 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
OGM53_RS19055 (OGM53_19035)	pcm	3808463..3809089 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
OGM53_RS19060 (OGM53_19040)	surE	3809083..3809844 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
OGM53_RS19065 (OGM53_19045)	truD	3809825..3810874 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
OGM53_RS19070 (OGM53_19050)	ispF	3810871..3811350 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OGM53_RS19075 (OGM53_19055)	ispD	3811350..3812060 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=640584 OGM53_RS19045 WP_000081550.1 3806129..3807121(-) (rpoS) [Escherichia coli strain S13]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=640584 OGM53_RS19045 WP_000081550.1 3806129..3807121(-) (rpoS) [Escherichia coli strain S13]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715