Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   X809_RS21955 Genome accession   NC_023037
Coordinates   4998959..4999912 (-) Length   317 a.a.
NCBI ID   WP_023990357.1    Uniprot ID   -
Organism   Paenibacillus polymyxa CR1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4993959..5004912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X809_RS21930 (X809_37665) - 4994428..4995339 (-) 912 WP_023990352.1 aldo/keto reductase -
  X809_RS21935 (X809_37670) - 4995497..4996240 (-) 744 WP_023990353.1 alpha/beta hydrolase -
  X809_RS21940 (X809_37675) - 4996274..4997254 (-) 981 WP_023990354.1 siderophore ABC transporter substrate-binding protein -
  X809_RS21945 (X809_37680) - 4997267..4998025 (-) 759 WP_023990355.1 ABC transporter ATP-binding protein -
  X809_RS21950 (X809_37685) - 4998019..4998969 (-) 951 WP_023990356.1 iron chelate uptake ABC transporter family permease subunit -
  X809_RS21955 (X809_37690) ceuB 4998959..4999912 (-) 954 WP_023990357.1 ABC transporter permease Machinery gene
  X809_RS21960 (X809_37695) - 5000241..5000918 (+) 678 WP_023990358.1 response regulator transcription factor -
  X809_RS21965 (X809_37700) - 5000915..5001832 (+) 918 WP_023990359.1 sensor histidine kinase -
  X809_RS21970 (X809_37705) - 5001941..5002618 (+) 678 WP_023990360.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34746.75 Da        Isoelectric Point: 9.9012

>NTDB_id=64058 X809_RS21955 WP_023990357.1 4998959..4999912(-) (ceuB) [Paenibacillus polymyxa CR1]
MKLRYLILAFLVLAFASVFIGVHDVTPLDVFHLTNDQAQVLLISRFPRLISIIIAGASMSICGLIMQQLTRNRFVSPTTA
GTMDAARLGVLMAIMVFGAAGFWTKMLTAFGFALGGTLIFMKILDKIRFKDPVFIPLVGLMFGGILNSVTTFFAYKYNLI
QGISSWMQGDFSLIMSGRYEMLYLSIPLVALAYIYANRFTIAGMGEDFAANLGVHYKRTVNVGLVIVALVSSVVILTVGT
IPFLGLVVPNLVSMYMGDNLKKSLAHTAILGAVFVLFCDILGRVIIYPYEISVGLTVGVIGSALFLYLLLRRRAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=64058 X809_RS21955 WP_023990357.1 4998959..4999912(-) (ceuB) [Paenibacillus polymyxa CR1]
ATGAAATTGCGTTATTTAATACTGGCTTTTCTGGTACTGGCCTTCGCCTCGGTTTTTATTGGTGTTCATGATGTAACTCC
ACTTGATGTGTTCCACTTAACCAACGATCAGGCGCAGGTACTCCTGATTAGCAGATTCCCACGATTGATCAGTATCATTA
TCGCAGGGGCGAGTATGAGTATCTGTGGGCTCATTATGCAGCAACTTACCCGGAACCGATTTGTATCTCCCACCACTGCG
GGGACGATGGACGCGGCACGATTGGGTGTGCTGATGGCTATTATGGTGTTTGGAGCGGCGGGATTTTGGACGAAGATGCT
GACGGCTTTCGGATTTGCTCTAGGGGGAACACTGATTTTCATGAAAATACTGGATAAAATCCGTTTCAAGGACCCGGTAT
TTATCCCGCTTGTCGGTTTGATGTTTGGAGGCATTTTAAATTCGGTAACGACCTTTTTTGCTTATAAATACAATCTGATC
CAGGGCATTTCTTCGTGGATGCAGGGAGACTTTTCTCTAATCATGAGTGGTCGCTACGAGATGCTATATCTTAGTATTCC
TTTGGTTGCGTTGGCGTACATATATGCAAATCGTTTTACAATTGCAGGCATGGGTGAGGATTTTGCGGCCAACTTGGGTG
TACATTACAAGCGCACCGTCAATGTCGGTTTGGTGATCGTGGCTTTGGTTTCCTCTGTTGTCATCTTAACGGTCGGGACG
ATTCCCTTTTTGGGGCTGGTTGTACCCAATCTAGTCAGCATGTATATGGGGGATAATCTTAAAAAAAGCCTGGCCCATAC
AGCGATCTTGGGCGCCGTCTTTGTGCTGTTTTGCGATATTTTGGGACGGGTGATCATTTATCCGTATGAAATTTCTGTAG
GGCTTACGGTTGGTGTGATCGGGAGCGCGTTGTTTTTGTATTTGCTGCTGAGGAGAAGGGCTTATGAATCCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.111

99.369

0.508

Multiple sequence alignment