Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   LXF01_RS15000 Genome accession   NZ_CP090067
Coordinates   3080610..3080936 (-) Length   108 a.a.
NCBI ID   WP_180078124.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3075610..3085936
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS14980 (LXF01_14980) - 3075732..3076481 (-) 750 WP_233944651.1 FHA domain-containing protein -
  LXF01_RS14985 (LXF01_14985) gspD 3076559..3078790 (-) 2232 WP_233944652.1 type II secretion system secretin GspD -
  LXF01_RS14990 (LXF01_14990) - 3078833..3079699 (-) 867 WP_233944653.1 type II secretion system protein N -
  LXF01_RS14995 (LXF01_14995) gspN 3079699..3080442 (-) 744 WP_180092862.1 type II secretion system protein N -
  LXF01_RS15000 (LXF01_15000) hns 3080610..3080936 (-) 327 WP_180078124.1 H-NS histone family protein Regulator
  LXF01_RS15005 (LXF01_15005) - 3081079..3081510 (-) 432 WP_233944654.1 thioesterase family protein -
  LXF01_RS15010 (LXF01_15010) - 3081520..3082713 (-) 1194 WP_233944655.1 heme biosynthesis protein HemY -
  LXF01_RS15015 (LXF01_15015) - 3082720..3083562 (-) 843 WP_180078016.1 hypothetical protein -
  LXF01_RS15020 (LXF01_15020) - 3083559..3084338 (-) 780 WP_180078014.1 uroporphyrinogen-III synthase -
  LXF01_RS15025 (LXF01_15025) hemC 3084342..3085259 (-) 918 WP_111886004.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12335.08 Da        Isoelectric Point: 5.3232

>NTDB_id=640557 LXF01_RS15000 WP_180078124.1 3080610..3080936(-) (hns) [Acinetobacter sp. SH20PTE14]
MMPDISNLSVEELKKLQVEAEALIASKKDQAIEDAYNRIIEIAENLDLSVEQILEFGSSKRKKSTRKAVEPRYRSKTNAD
DTWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=640557 LXF01_RS15000 WP_180078124.1 3080610..3080936(-) (hns) [Acinetobacter sp. SH20PTE14]
ATTATGCCTGATATTAGTAATTTATCAGTTGAAGAGTTAAAGAAGCTTCAAGTAGAAGCTGAAGCACTGATTGCATCTAA
AAAAGATCAAGCGATTGAAGATGCATACAACCGTATTATTGAAATTGCAGAAAATTTAGATTTAAGTGTTGAACAAATCC
TTGAATTTGGTTCAAGCAAACGTAAAAAATCAACTCGTAAAGCTGTTGAGCCACGTTACCGTAGCAAAACCAATGCAGAT
GACACGTGGACCGGTCGTGGTAAACAACCGCGTTGGTTAGTGGCTGAGCTAGAAAAAGGCGCGAAACTAGAAGACTTCTT
AATTTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

83.333

100

0.833