Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   LXF01_RS14670 Genome accession   NZ_CP090067
Coordinates   3003203..3005425 (+) Length   740 a.a.
NCBI ID   WP_233944630.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2998203..3010425
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS14645 (LXF01_14645) lnt 2998534..3000093 (+) 1560 WP_233944629.1 apolipoprotein N-acyltransferase -
  LXF01_RS14650 (LXF01_14650) - 3000179..3000517 (-) 339 WP_111885638.1 tRNA-binding protein -
  LXF01_RS14655 (LXF01_14655) - 3000754..3001089 (-) 336 WP_078189783.1 hypothetical protein -
  LXF01_RS14660 (LXF01_14660) gspG 3001373..3001810 (-) 438 WP_078189784.1 type II secretion system major pseudopilin GspG -
  LXF01_RS14665 (LXF01_14665) gspF 3001847..3003052 (-) 1206 WP_180034999.1 type II secretion system inner membrane protein GspF -
  LXF01_RS14670 (LXF01_14670) priA 3003203..3005425 (+) 2223 WP_233944630.1 primosomal protein N' Machinery gene
  LXF01_RS14675 (LXF01_14675) - 3005505..3007346 (+) 1842 WP_233944631.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  LXF01_RS14680 (LXF01_14680) hslO 3007397..3008272 (+) 876 WP_111885623.1 Hsp33 family molecular chaperone HslO -
  LXF01_RS14685 (LXF01_14685) - 3008519..3008971 (+) 453 WP_233944632.1 DUF2147 domain-containing protein -
  LXF01_RS14690 (LXF01_14690) - 3009256..3009720 (+) 465 WP_233944633.1 DUF2147 domain-containing protein -
  LXF01_RS14695 (LXF01_14695) - 3009909..3010373 (+) 465 WP_168377965.1 DUF2147 domain-containing protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 83827.95 Da        Isoelectric Point: 8.8494

>NTDB_id=640556 LXF01_RS14670 WP_233944630.1 3003203..3005425(+) (priA) [Acinetobacter sp. SH20PTE14]
MANSASIATPIYRVRVAVPVYLYDCFDYSLSQEQYQQAEVGARVAVSFGRQNLTGIIVEKIAPDAPLDSSFKLKAITELL
DDRAILDEKVLNLLTWSAQYYQFPIGEVMQSALPTLLRQGKPYNLLARTWNLIDHNAEAKIKRSERQQEAYKILKLHPTG
TGENLLNLSGVETATLKALEKKGICQCVLAEQDFSPMPMSMAQMPLTANPDQKKAIDTVLKARKKYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCNIALLHSGLNDSKRMQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIVIDEEHDLSFKQQEGFRYHARDVALFRGHLEQCPVILGSATPSIECYALAKQGKMTILELNQRAGTAVMPKIHI
LDLKVAQKQHGISQLLIGEIRKRLEKKEQVLVFLNRRGYAPVLICESCAWQAKCPHCDANFTVHRTPYQHLHCHHCGTIH
RMPDHCPQCNHQELKSIGMGTAKVEESLNELFPEHDIIRVDRDSTSRVGSWQKIYDKIQKSEPAILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRAIERTAQLIVQVTGRAGRGERKGDVFLQTLRPDHPLLNILVNENYRKFAKETMKEREMAQM
PPFRYAALVRCESKNQELNTEFLQQHAQLLRQDSAGIIDIWGPIPAPMERKAGRYQSHMVLLSTDRARLHYYLRYWWQNI
LHNKPSNMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=640556 LXF01_RS14670 WP_233944630.1 3003203..3005425(+) (priA) [Acinetobacter sp. SH20PTE14]
ATGGCAAATTCAGCGAGCATTGCAACACCTATTTACCGCGTTCGAGTCGCCGTTCCGGTATATTTATACGACTGCTTCGA
TTACAGCTTAAGCCAAGAGCAATACCAACAAGCTGAAGTAGGTGCACGCGTTGCTGTATCTTTTGGTCGGCAAAATTTGA
CCGGCATCATCGTGGAAAAAATTGCACCCGATGCACCACTCGATTCAAGCTTTAAACTCAAGGCCATTACTGAACTTCTT
GATGATCGTGCCATTTTAGATGAGAAAGTTTTAAATTTATTGACATGGTCTGCACAGTATTACCAATTTCCGATTGGTGA
AGTGATGCAAAGTGCCCTTCCGACGCTGTTACGCCAAGGAAAGCCCTATAATTTACTGGCACGGACATGGAATCTGATCG
ACCATAATGCTGAAGCCAAAATTAAACGTTCAGAGCGTCAGCAAGAAGCGTATAAAATACTAAAATTACATCCCACAGGC
ACAGGTGAAAATCTTTTAAATTTGTCAGGTGTGGAAACAGCAACACTCAAAGCATTAGAGAAAAAAGGTATCTGCCAATG
TGTCTTGGCCGAACAGGACTTTAGCCCGATGCCTATGAGCATGGCGCAAATGCCACTTACGGCAAACCCTGACCAAAAAA
AAGCGATCGATACCGTATTAAAAGCACGTAAAAAATATCAGGCCTTCCTGCTCGATGGCTTAACTGGCAGTGGTAAAACT
GAAGTCTATTTACAAATCATGCAAGAGGTTCTCAAGCAAGGCAAACAGGTCTTGGTTTTAGTGCCTGAGATTGGACTCAC
CCCACAGACGATTAGCCGCTTCCAATCACGTTTTCATTGCAATATTGCCCTATTACATTCGGGGCTAAACGATTCAAAAC
GTATGCAAGCTTGGCAAGCTGCGCAAACGGGCAAGGCTTCAATTATCTTAGGCACACGTTCTGCGATTTATACGCCACTG
CCTAATCTAGGTTTAATTGTGATTGATGAAGAGCATGATCTGTCCTTTAAACAACAAGAAGGCTTTCGCTACCATGCACG
CGATGTTGCTCTGTTCCGTGGACATTTAGAGCAATGTCCTGTCATTCTTGGCTCTGCCACACCTAGTATTGAATGCTATG
CCCTTGCCAAACAAGGCAAGATGACAATTTTGGAACTAAACCAACGCGCAGGCACCGCGGTCATGCCGAAAATACACATC
CTTGATTTGAAAGTGGCACAGAAACAGCATGGAATTAGCCAATTATTAATTGGTGAAATCCGTAAGCGCCTAGAAAAAAA
AGAACAGGTGTTAGTGTTCTTAAACCGTCGCGGATATGCCCCGGTTTTAATTTGTGAAAGCTGTGCATGGCAGGCCAAAT
GTCCGCACTGTGATGCCAATTTCACGGTTCATCGCACACCTTATCAACATTTACATTGTCATCACTGCGGCACCATTCAC
CGTATGCCAGATCACTGTCCACAGTGTAATCATCAGGAGCTCAAATCTATTGGGATGGGCACAGCCAAAGTTGAAGAAAG
TTTAAATGAGTTATTTCCTGAACATGACATCATTCGAGTGGATCGTGACTCAACCAGCCGCGTTGGTAGTTGGCAAAAGA
TTTATGACAAAATTCAAAAAAGTGAGCCTGCTATTTTGCTTGGTACGCAAATGCTGGCCAAAGGTCATCATTTCCCTTAC
GTCACCTTGGTGGCGATTTTAGATATCGATTCAGGTCTGCTGAGTGTGGACTTCCGTGCCATCGAGCGTACTGCACAGCT
CATTGTACAAGTCACTGGGCGTGCCGGCCGTGGTGAACGTAAAGGCGATGTGTTTTTACAAACCCTAAGACCCGACCATC
CGCTTTTGAATATTTTGGTCAATGAGAACTACCGAAAATTTGCCAAAGAAACCATGAAAGAACGGGAAATGGCACAAATG
CCACCGTTTCGCTATGCCGCATTGGTACGCTGTGAGTCAAAAAACCAAGAACTCAATACTGAATTTTTACAGCAACATGC
CCAATTGCTGCGTCAGGACTCTGCTGGAATTATTGACATTTGGGGGCCGATTCCTGCCCCGATGGAGCGCAAAGCAGGGC
GTTACCAATCCCACATGGTTTTGCTGTCAACAGATCGTGCACGCTTACATTATTATCTGCGTTATTGGTGGCAAAACATC
TTACATAACAAGCCATCAAATATGAAATTGAGCCTCGATATAGACCCACAGGAACTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.175

98.919

0.704