Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   LXF01_RS10595 Genome accession   NZ_CP090067
Coordinates   2130158..2130550 (-) Length   130 a.a.
NCBI ID   WP_233944298.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2125158..2135550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS10565 (LXF01_10565) tadA 2125342..2125893 (-) 552 WP_078188939.1 tRNA adenosine(34) deaminase TadA -
  LXF01_RS10570 (LXF01_10570) - 2125897..2127021 (-) 1125 WP_233944297.1 enoyl-CoA hydratase/isomerase family protein -
  LXF01_RS10575 (LXF01_10575) ung 2127018..2127731 (-) 714 WP_078193660.1 uracil-DNA glycosylase -
  LXF01_RS10580 (LXF01_10580) - 2127768..2128364 (-) 597 WP_180077646.1 6-carboxytetrahydropterin synthase -
  LXF01_RS10585 (LXF01_10585) gspK 2128495..2129442 (-) 948 WP_180023912.1 type II secretion system minor pseudopilin GspK -
  LXF01_RS10590 (LXF01_10590) xcpW 2129482..2130111 (-) 630 WP_233945461.1 type II secretion system minor pseudopilin GspJ Machinery gene
  LXF01_RS10595 (LXF01_10595) xcpV 2130158..2130550 (-) 393 WP_233944298.1 type II secretion system minor pseudopilin GspI Machinery gene
  LXF01_RS10600 (LXF01_10600) - 2130540..2131097 (-) 558 WP_180077640.1 type II secretion system protein -
  LXF01_RS10605 (LXF01_10605) - 2131107..2131721 (-) 615 WP_078193665.1 TetR/AcrR family transcriptional regulator -
  LXF01_RS10610 (LXF01_10610) - 2131764..2132537 (-) 774 WP_233944299.1 TatD family hydrolase -
  LXF01_RS10615 (LXF01_10615) - 2132569..2132910 (-) 342 WP_111885061.1 PilZ domain-containing protein -
  LXF01_RS10620 (LXF01_10620) - 2132926..2133909 (-) 984 WP_180059027.1 DNA polymerase III subunit delta' -
  LXF01_RS10625 (LXF01_10625) kdsB 2133923..2134684 (-) 762 WP_233944300.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 130 a.a.        Molecular weight: 14310.39 Da        Isoelectric Point: 4.7954

>NTDB_id=640548 LXF01_RS10595 WP_233944298.1 2130158..2130550(-) (xcpV) [Acinetobacter sp. SH20PTE14]
MGAKGFTLLEVMVALAIFATAAMALSNVVMQYTQSTAHAILRNKAQFVALNEIAKMEINREWMTGTASKQVTEQGEQWQI
DKKAQATISPNVQRIDIQVSLMNAETGDVEAGISSLVFFNYKVPLDENNN

Nucleotide


Download         Length: 393 bp        

>NTDB_id=640548 LXF01_RS10595 WP_233944298.1 2130158..2130550(-) (xcpV) [Acinetobacter sp. SH20PTE14]
ATGGGGGCTAAAGGATTTACGCTACTTGAAGTCATGGTGGCATTGGCGATTTTTGCGACTGCGGCAATGGCTTTGTCTAA
TGTTGTGATGCAATATACACAGTCGACAGCACACGCAATTTTAAGAAATAAAGCACAATTCGTTGCGCTGAATGAAATCG
CTAAGATGGAAATCAATCGTGAATGGATGACGGGTACTGCATCTAAACAAGTCACTGAACAAGGCGAACAATGGCAAATT
GACAAAAAAGCCCAAGCCACCATTAGTCCAAATGTACAACGGATTGATATCCAAGTGAGTTTGATGAATGCTGAAACAGG
CGATGTTGAAGCAGGGATTAGCAGTTTGGTGTTCTTTAACTATAAGGTTCCGTTGGATGAAAATAATAACTAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Type II secretion system (T2SS), protein I (T2SSI)

(45-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

71.545

94.615

0.677