Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   LXF01_RS02420 Genome accession   NZ_CP090067
Coordinates   487412..488269 (+) Length   285 a.a.
NCBI ID   WP_218948631.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 482412..493269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS02390 (LXF01_02390) wrbA 483057..483650 (+) 594 WP_078192437.1 NAD(P)H:quinone oxidoreductase -
  LXF01_RS02395 (LXF01_02395) - 483968..484156 (+) 189 WP_180103024.1 hypothetical protein -
  LXF01_RS02400 (LXF01_02400) - 484265..484663 (-) 399 WP_180049320.1 hypothetical protein -
  LXF01_RS02405 (LXF01_02405) - 484931..485506 (-) 576 WP_078189246.1 xanthine phosphoribosyltransferase -
  LXF01_RS02410 (LXF01_02410) - 485598..486311 (-) 714 WP_180010540.1 DUF3108 domain-containing protein -
  LXF01_RS02415 (LXF01_02415) - 486470..487153 (-) 684 WP_180103025.1 hypothetical protein -
  LXF01_RS02420 (LXF01_02420) tonB2 487412..488269 (+) 858 WP_218948631.1 TonB family protein Machinery gene
  LXF01_RS02425 (LXF01_02425) - 488270..488560 (-) 291 WP_111885943.1 antibiotic biosynthesis monooxygenase -
  LXF01_RS02430 (LXF01_02430) ybeY 488624..489106 (-) 483 WP_078192431.1 rRNA maturation RNase YbeY -
  LXF01_RS02435 (LXF01_02435) - 489116..490207 (-) 1092 WP_180103026.1 PhoH family protein -
  LXF01_RS02440 (LXF01_02440) miaB 490246..491703 (-) 1458 WP_180103027.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32620.18 Da        Isoelectric Point: 7.3203

>NTDB_id=640538 LXF01_RS02420 WP_218948631.1 487412..488269(+) (tonB2) [Acinetobacter sp. SH20PTE14]
MPLMKEWWKDPIFATALVFAAVLHLAFLTMQFSMPQEADYNTKEIAVSLRSTTEKIEHADFLAQADQQGSGTFRESHRMS
SDMPAPMIEQKAGEQKSEALEQLQQKKELSFEDKVLMTTLSWQKQAEENSRKKAVEELNSQFQAKAAMVASIEAQYLQRQ
QNFSRQQKIKTIDGIQAKQDVSAAYMEKFREKVEFYGNRYYPEAAKQQQLRGEVRLMVILNSNGGIRAIRLIESSGSSLL
DEAAKTSVRKAAPFGLFDAKMKDISELRIVRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 858 bp        

>NTDB_id=640538 LXF01_RS02420 WP_218948631.1 487412..488269(+) (tonB2) [Acinetobacter sp. SH20PTE14]
ATGCCCTTGATGAAAGAGTGGTGGAAAGATCCCATATTTGCAACTGCATTAGTGTTTGCTGCTGTGTTGCATTTGGCTTT
TTTAACCATGCAATTTTCCATGCCCCAAGAGGCGGATTATAACACCAAAGAAATTGCAGTTTCTTTACGTTCTACGACGG
AAAAAATTGAACATGCAGACTTTTTAGCACAAGCCGATCAGCAGGGCTCGGGGACATTCCGTGAGTCGCATCGTATGTCG
AGTGACATGCCTGCACCGATGATCGAACAAAAAGCCGGTGAGCAAAAAAGTGAAGCTTTAGAACAACTGCAACAAAAGAA
AGAACTCAGCTTTGAAGACAAAGTGTTGATGACAACCTTGAGTTGGCAAAAACAAGCGGAAGAAAACAGTCGTAAAAAAG
CCGTTGAGGAGTTGAATAGTCAGTTTCAGGCCAAGGCTGCGATGGTGGCGAGTATTGAAGCTCAATATTTACAACGTCAG
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACCATTGATGGCATTCAAGCCAAGCAAGATGTTTCTGCTGCTTACATGGA
AAAATTTCGCGAAAAAGTCGAATTTTACGGTAACCGTTATTATCCTGAAGCGGCAAAACAGCAACAGCTACGCGGTGAAG
TACGTTTAATGGTTATTTTGAACAGTAATGGCGGGATTCGTGCCATTCGTTTGATCGAAAGTTCAGGTTCAAGCTTATTG
GATGAAGCAGCAAAAACCTCTGTGCGTAAGGCGGCACCTTTTGGTTTGTTTGATGCCAAAATGAAAGACATCTCAGAACT
TCGTATTGTGCGTACTTGGCGCTTTGATCCTGCAGAAGCAGAGTTTGAGGTGCGTTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

72.043

97.895

0.705