Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   LXF01_RS00820 Genome accession   NZ_CP090067
Coordinates   174072..175226 (-) Length   384 a.a.
NCBI ID   WP_078191460.1    Uniprot ID   -
Organism   Acinetobacter sp. SH20PTE14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 169072..180226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXF01_RS00795 (LXF01_00795) - 169289..169834 (-) 546 WP_233944877.1 glutathione peroxidase -
  LXF01_RS00800 (LXF01_00800) - 169979..170737 (-) 759 WP_180079239.1 helix-turn-helix transcriptional regulator -
  LXF01_RS00805 (LXF01_00805) - 170860..171741 (+) 882 WP_233944879.1 DMT family transporter -
  LXF01_RS00810 (LXF01_00810) - 172178..172747 (-) 570 WP_111885874.1 Sua5/YciO/YrdC/YwlC family protein -
  LXF01_RS00815 (LXF01_00815) dprA 172779..173960 (-) 1182 WP_233944880.1 DNA-processing protein DprA Machinery gene
  LXF01_RS00820 (LXF01_00820) tsaP 174072..175226 (-) 1155 WP_078191460.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  LXF01_RS00825 (LXF01_00825) def 175346..175876 (+) 531 WP_078191459.1 peptide deformylase -
  LXF01_RS00830 (LXF01_00830) - 175967..176386 (+) 420 WP_180063357.1 DUF2946 family protein -
  LXF01_RS00835 (LXF01_00835) - 176459..178573 (+) 2115 WP_233944881.1 TonB-dependent copper receptor -
  LXF01_RS00840 (LXF01_00840) - 178620..179768 (-) 1149 WP_233945403.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42033.41 Da        Isoelectric Point: 9.3946

>NTDB_id=640522 LXF01_RS00820 WP_078191460.1 174072..175226(-) (tsaP) [Acinetobacter sp. SH20PTE14]
MKKVLKGMPTFSALGFKKQLLALTVCVSVGMGMVSVAEAAPARNVNPPSLKAGAPQVYVVKKGDTLWDISKRFLKNPVRW
PEIWASNKHVKNPHWIFPGDRLLMCTYNGRPIIGKDEGDGCEGIIRRYTGGTKLQPQVRVESLNSAIPVIPLEYIKQWLE
RSMIVAADSVEGTPYILGTADQRVLAAKGQTVYARGQGMQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGVAVR
GENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAENVTAGGSIVRVMGSIGTAAVHSVVTIDRGSLQGVQSGQ
VFSVNQKGEIVTDPKTKERVQLPGQRIGNIMVFKTFDNLSYAYVLESELPIKVGATIQPPLMDD

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=640522 LXF01_RS00820 WP_078191460.1 174072..175226(-) (tsaP) [Acinetobacter sp. SH20PTE14]
ATGAAAAAGGTTTTGAAGGGCATGCCAACTTTTAGTGCCTTGGGGTTTAAAAAACAATTATTGGCACTTACAGTCTGTGT
AAGTGTGGGGATGGGAATGGTCAGTGTTGCAGAAGCTGCCCCTGCTCGTAACGTCAATCCACCGTCATTGAAGGCAGGTG
CGCCTCAAGTTTATGTGGTGAAAAAAGGCGATACGTTGTGGGATATTTCCAAGCGTTTCTTAAAAAATCCTGTGCGCTGG
CCTGAAATCTGGGCGAGCAATAAACACGTGAAAAATCCGCACTGGATTTTCCCAGGTGACCGCCTATTAATGTGTACCTA
CAATGGCCGCCCAATCATCGGTAAGGATGAAGGTGATGGCTGTGAAGGTATTATTCGTCGCTATACAGGTGGCACTAAAC
TTCAACCACAAGTTCGTGTTGAATCCCTCAACAGTGCGATTCCGGTTATCCCATTAGAATATATTAAGCAATGGCTTGAG
CGCAGCATGATTGTTGCCGCTGATTCTGTTGAAGGCACACCTTACATTTTAGGTACAGCTGATCAACGTGTATTAGCTGC
CAAAGGCCAAACAGTTTATGCACGCGGCCAAGGTATGCAAGTCGGTCAACGTTATGCTGTTTACCGTGAAGGCGAACCGT
ACATCTTTACCGATGCAAACGGCAAAAAATACAACGCAGGTTTAGAACTGACTCAAGTCGCTTCAGGTGTTGCCGTTCGT
GGTGAAAATGACATTACCACTTTAGAACTGACCGATACTTATAATGCCGAAGTTCGTCGTGGCGATCGTGTTCTTCCTGA
ATATGACCCAATGCTGCCAACGCTGTTCTATCCAACCAATGCTGAAAATGTCACTGCTGGCGGTAGTATTGTTCGTGTCA
TGGGCTCGATTGGTACTGCAGCGGTTCACAGTGTGGTGACGATCGACCGTGGTAGCTTGCAAGGCGTTCAATCTGGTCAA
GTCTTTAGCGTGAACCAAAAAGGTGAAATCGTGACTGATCCGAAAACCAAAGAACGTGTTCAACTTCCAGGACAACGTAT
TGGCAACATCATGGTATTCAAAACGTTTGATAACTTAAGCTATGCTTATGTACTTGAGAGCGAATTACCAATCAAAGTGG
GTGCAACGATTCAGCCACCACTGATGGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

69.87

100

0.701