Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LW347_RS02710 Genome accession   NZ_CP090065
Coordinates   584638..586020 (-) Length   460 a.a.
NCBI ID   WP_258883918.1    Uniprot ID   A0AAE9NS51
Organism   Pectobacterium polonicum strain BY21311     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 579638..591020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LW347_RS02680 (LW347_02680) pepP 579887..581212 (-) 1326 WP_258884996.1 Xaa-Pro aminopeptidase -
  LW347_RS02685 (LW347_02685) - 581298..581861 (-) 564 WP_258883917.1 YecA family protein -
  LW347_RS02690 (LW347_02690) zapA 582054..582383 (+) 330 WP_005971092.1 cell division protein ZapA -
  LW347_RS02700 (LW347_02700) - 582682..583323 (+) 642 Protein_518 5-formyltetrahydrofolate cyclo-ligase -
  LW347_RS02705 (LW347_02705) nadR 583320..584573 (-) 1254 WP_137741480.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  LW347_RS02710 (LW347_02710) radA 584638..586020 (-) 1383 WP_258883918.1 DNA repair protein RadA Machinery gene
  LW347_RS02715 (LW347_02715) serB 586038..587015 (-) 978 WP_258883919.1 phosphoserine phosphatase -
  LW347_RS02720 (LW347_02720) - 587172..587852 (+) 681 WP_258883920.1 YtjB family periplasmic protein -
  LW347_RS02725 (LW347_02725) - 587902..588831 (-) 930 WP_258883921.1 hypothetical protein -
  LW347_RS02730 (LW347_02730) prfC 589123..590712 (+) 1590 WP_107170832.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49560.13 Da        Isoelectric Point: 7.6670

>NTDB_id=640492 LW347_RS02710 WP_258883918.1 584638..586020(-) (radA) [Pectobacterium polonicum strain BY21311]
MAKAVKRAFVCNECGADYPRRQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=640492 LW347_RS02710 WP_258883918.1 584638..586020(-) (radA) [Pectobacterium polonicum strain BY21311]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCGGATTACCCGCGCAGGCAAGGGCAGTGCAGCGC
CTGCCACGCCTGGAATACCATTACTGAAGTTCGCCTGGCGTCGGCATCCGTATCACGCTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTTAGCCGGGTGCAAAAGCTCTCGGAAATCAGCCTTGAAGCGTTGCCCCGCTTTTCCACTGGC
TTTCAGGAATTTGATCGCGTTCTGGGCGGCGGCGTCGTTCCGGGCAGCGCGATCCTGATCGGCGGCAACCCCGGCGCGGG
CAAGAGTACCCTGCTGCTGCAAACGCTGTGCAAGCTGTCAGAAAATATGAAGACCCTGTACGTCACCGGTGAAGAATCAC
TACAACAGGTGGCAATGCGGGCACATCGCCTCAATCTGCCGACGCAGAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAATTGATGGTGATCGACTCCATTCAGGTCATGCATCTTGCCGATAT
TCAATCATCCCCCGGAAGTGTCGCACAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTCATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTCTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCGATTTTCCTAAGCCGCGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTTGAGATTCAGGCACTGGTCGATCAA
TCGATGATGGCTAATCCGCGCCGCGTCGCGGTGGGGCTGGAGCAAAACCGCCTGGCGATTCTGCTGGCAGTACTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTATTCGTGAATGTCGTCGGCGGCGTCAAAGTCACCGAAACCAGCGCAG
ATCTGGCATTGCTGCTCTCGCTGGTTTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATTCGTCCAGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAACACGGTTTTAAACGTGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCAGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.043

100

0.48
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426