Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   X809_RS12260 Genome accession   NC_023037
Coordinates   2780415..2782265 (+) Length   616 a.a.
NCBI ID   WP_023988615.1    Uniprot ID   A0A8I1XWC1
Organism   Paenibacillus polymyxa CR1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2775415..2787265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X809_RS12240 (X809_28185) - 2776153..2777376 (+) 1224 WP_023988611.1 Ger(x)C family spore germination protein -
  X809_RS12245 (X809_28190) - 2777382..2777612 (+) 231 WP_023988612.1 hypothetical protein -
  X809_RS12250 (X809_28195) - 2778175..2778585 (+) 411 WP_023988613.1 MarR family winged helix-turn-helix transcriptional regulator -
  X809_RS12255 (X809_28200) rcrP 2778659..2780422 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  X809_RS12260 (X809_28205) rcrQ 2780415..2782265 (+) 1851 WP_023988615.1 ABC transporter ATP-binding protein Regulator
  X809_RS12265 (X809_28210) - 2782385..2782693 (+) 309 WP_023988616.1 hypothetical protein -
  X809_RS27980 (X809_28215) - 2783038..2783391 (+) 354 WP_235322420.1 hypothetical protein -
  X809_RS12275 (X809_28220) - 2783637..2784056 (+) 420 WP_023988619.1 ester cyclase -
  X809_RS12280 (X809_28225) - 2784281..2785672 (-) 1392 WP_023988620.1 PLP-dependent aminotransferase family protein -
  X809_RS12285 (X809_28230) azlC 2785780..2786511 (+) 732 WP_023988621.1 azaleucine resistance protein AzlC -
  X809_RS12290 (X809_28235) - 2786492..2786824 (+) 333 WP_023988622.1 branched-chain amino acid transporter permease -

Sequence

Protein


Download         Length: 616 a.a.        Molecular weight: 67804.35 Da        Isoelectric Point: 6.1585

>NTDB_id=64047 X809_RS12260 WP_023988615.1 2780415..2782265(+) (rcrQ) [Paenibacillus polymyxa CR1]
MDKNEHTVDSQQMKMNQGGPMGKGPAGGKGAGEKANNFKKTISQLVSYSKAYVPMIVLAMVLALVGSTLNVIGPDKLSDI
ANLIQEGIVTGIDVSAVQKIVLVLALLYGFGLIFNYFQGFITATVSQRLTKKMRTELSRKIDHMPLKYFDSTSYGNVLSR
VTNDVDTIGQTLNNSLGTLVGALATFVGALIMMLYTNWIMTITGIVATLIGFCLMSVIMKHSQKYFVAQQAELGQINGHI
EETYAGHNVVKVYNGEQAAKEVFHGINSRLYTNAWKSQFMSGLMMPVMMFIGNFGYVAVCVVGALLVNQQTITIGTIVAF
MVYIRLFTQPLSQLAQAATNLQSAAAASERVFEFLGEEELADERHKTIKMDTAKGDVEFKHVRFGYNTDRMIIKDFSMKA
EAGQKIAIVGPTGAGKTTLVNLLMRFYELNDGEIYIDGTPISQLTRENIHELFCMVLQDTWLFEGTIRDNIVFSKDHVTD
EQVEAASRAVGLHSFIKTLPQGYDTVLDDKANLSAGQKQLITIARAMIEDSPMLILDEATSSVDTRTELLIQQAMDQLTV
GKTSFVIAHRLSTIKNADLILVMKDGDIIEMGNHEELLAKGGFYADLYNSQFEHAS

Nucleotide


Download         Length: 1851 bp        

>NTDB_id=64047 X809_RS12260 WP_023988615.1 2780415..2782265(+) (rcrQ) [Paenibacillus polymyxa CR1]
ATGGATAAGAATGAACACACCGTCGACAGCCAGCAAATGAAAATGAATCAGGGAGGTCCCATGGGTAAAGGCCCTGCGGG
GGGCAAGGGTGCTGGTGAAAAAGCGAATAATTTTAAAAAGACCATCAGCCAGCTTGTATCCTACAGCAAGGCCTATGTGC
CTATGATTGTACTAGCTATGGTACTGGCCCTGGTCGGCTCCACCCTCAACGTGATTGGCCCGGATAAGCTCAGTGATATT
GCCAACCTGATTCAGGAAGGAATCGTAACCGGGATTGATGTAAGTGCTGTTCAGAAGATTGTTCTTGTATTGGCGCTTTT
ATATGGATTTGGTCTTATCTTTAACTATTTCCAGGGCTTCATTACAGCAACCGTCTCACAGCGTCTTACAAAGAAGATGC
GGACAGAGCTGTCTCGAAAAATCGATCATATGCCTTTGAAGTATTTTGACTCTACGAGTTACGGTAATGTGCTTAGCCGC
GTAACCAACGATGTCGATACCATCGGACAAACGTTAAACAACAGTCTCGGCACGCTTGTCGGTGCACTGGCTACCTTCGT
GGGCGCCTTGATTATGATGCTTTATACAAACTGGATCATGACCATTACCGGAATTGTAGCTACGCTGATCGGCTTTTGCC
TGATGAGCGTGATTATGAAGCATTCACAGAAATACTTTGTAGCACAGCAAGCGGAGCTTGGTCAGATCAACGGTCATATC
GAAGAAACCTATGCTGGTCATAACGTAGTCAAGGTATATAACGGGGAACAAGCAGCCAAGGAAGTGTTTCATGGCATTAA
CAGCCGCCTATATACAAATGCATGGAAGTCCCAGTTCATGTCTGGTCTGATGATGCCAGTCATGATGTTCATTGGAAATT
TTGGTTATGTCGCGGTTTGTGTCGTGGGAGCTTTGCTGGTCAACCAACAGACTATAACTATCGGAACTATTGTCGCCTTC
ATGGTGTATATTCGTCTGTTTACACAGCCCTTGTCGCAGCTGGCACAGGCCGCAACCAATCTGCAGTCGGCGGCTGCCGC
CAGTGAACGTGTATTCGAATTTCTGGGTGAAGAAGAATTGGCAGATGAGCGTCACAAGACCATAAAGATGGACACCGCCA
AAGGGGATGTCGAATTCAAACATGTCCGTTTCGGCTATAATACAGATCGTATGATTATCAAGGACTTCTCCATGAAAGCT
GAAGCTGGTCAGAAAATTGCCATTGTTGGTCCGACAGGTGCTGGTAAGACCACGCTCGTGAATTTGCTCATGCGGTTTTA
TGAGCTGAACGATGGAGAAATCTACATTGACGGAACCCCGATTAGCCAATTAACGCGTGAGAATATTCATGAATTATTCT
GTATGGTGCTTCAGGATACCTGGCTGTTCGAAGGAACGATTCGTGACAATATCGTCTTTTCCAAAGATCATGTTACCGAT
GAGCAGGTGGAAGCTGCTAGTAGAGCGGTGGGGCTGCACAGCTTCATTAAAACACTGCCGCAGGGCTATGATACAGTGCT
GGACGACAAAGCCAATCTCTCCGCCGGTCAAAAGCAATTGATTACCATTGCAAGAGCGATGATTGAAGATTCACCCATGC
TCATTCTGGATGAGGCCACAAGCTCGGTTGATACGCGTACGGAATTGCTGATTCAACAAGCGATGGACCAGCTGACTGTG
GGGAAAACCTCCTTTGTGATTGCTCACCGACTTTCGACGATCAAGAATGCGGATCTGATTCTGGTCATGAAGGATGGTGA
CATTATCGAAATGGGTAACCATGAGGAATTGCTGGCTAAAGGCGGCTTCTATGCTGATCTATACAACAGTCAGTTTGAAC
ATGCATCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(58-331)

ABC transporter (ABC_tran)

(394-541)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

56.326

93.669

0.528

Multiple sequence alignment