Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   X809_RS12255 Genome accession   NC_023037
Coordinates   2778659..2780422 (+) Length   587 a.a.
NCBI ID   WP_023988614.1    Uniprot ID   A0AAJ3J4R6
Organism   Paenibacillus polymyxa CR1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2773659..2785422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  X809_RS12235 (X809_28180) - 2774643..2776172 (+) 1530 WP_023988610.1 spore germination protein -
  X809_RS12240 (X809_28185) - 2776153..2777376 (+) 1224 WP_023988611.1 Ger(x)C family spore germination protein -
  X809_RS12245 (X809_28190) - 2777382..2777612 (+) 231 WP_023988612.1 hypothetical protein -
  X809_RS12250 (X809_28195) - 2778175..2778585 (+) 411 WP_023988613.1 MarR family winged helix-turn-helix transcriptional regulator -
  X809_RS12255 (X809_28200) rcrP 2778659..2780422 (+) 1764 WP_023988614.1 ABC transporter ATP-binding protein Regulator
  X809_RS12260 (X809_28205) rcrQ 2780415..2782265 (+) 1851 WP_023988615.1 ABC transporter ATP-binding protein Regulator
  X809_RS12265 (X809_28210) - 2782385..2782693 (+) 309 WP_023988616.1 hypothetical protein -
  X809_RS27980 (X809_28215) - 2783038..2783391 (+) 354 WP_235322420.1 hypothetical protein -
  X809_RS12275 (X809_28220) - 2783637..2784056 (+) 420 WP_023988619.1 ester cyclase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64866.14 Da        Isoelectric Point: 7.8021

>NTDB_id=64046 X809_RS12255 WP_023988614.1 2778659..2780422(+) (rcrP) [Paenibacillus polymyxa CR1]
MLKIFKYLKKNEWMLVVCSLAFIVVQVWLDLKLPDYMAEITTKLQTEGTPVSELLIPGSYMLFCAVGSMIASIIVGYFAA
KVAAGLAMRLRAMVFDKTLSFSMEEMNNFSTASLITRSTNDVTQIQTVVALGLQVIIKAPILAVWAIVKIADKNWQWTAS
TGAAVAALILMLSVIVVFALPSFQRIQRLTDNLNRVTREHLIGLRVVRAYNADQYQQEKFEQANVELTNTNLFANRLMTM
IGPGMTFIMSGLSVSIYWIGAYLINGAAVPDRITLFSNMVVFSSYAMQVVMAFMMVSMIFILMPRASISAKRIMEVLNTE
SSIVNGHETTGEESVMGQVEFRNVSFKYPDAEEAVLRNISFTAKRGETVAFIGATGSGKTSVINLIPRFYDVTEGEVLVD
GVNVRNYNQQALHNKIGYVPQRAVLFNGTVVSNVSYGDNGRAGASEKLVKEAVGIAQGTEFVEKMDGQYQGRISQGGANV
SGGQKQRLSIARAIYRQPEIYIFDDSFSALDYRTDRILRSALKKETGHATTLIVGQRIGTIKDADRIIVLDQGEIVGSGT
HEELMTNCSTYQEIAYSQLSKEELIHG

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=64046 X809_RS12255 WP_023988614.1 2778659..2780422(+) (rcrP) [Paenibacillus polymyxa CR1]
ATGCTAAAGATATTCAAATATCTCAAGAAAAATGAATGGATGCTTGTGGTTTGCAGCCTAGCCTTCATCGTTGTGCAGGT
GTGGCTTGATCTGAAGCTACCTGATTATATGGCGGAAATTACGACCAAGCTGCAAACGGAAGGAACGCCTGTGTCCGAAC
TGCTGATTCCCGGCAGTTACATGTTGTTTTGTGCCGTCGGCAGTATGATTGCATCTATTATTGTGGGATATTTCGCGGCA
AAGGTGGCTGCAGGGCTGGCTATGCGTCTGCGTGCGATGGTCTTTGACAAGACCTTATCCTTTTCAATGGAAGAGATGAA
TAACTTTTCGACGGCAAGCCTCATTACCCGCTCCACGAACGATGTTACGCAGATTCAAACGGTGGTTGCGCTGGGGCTGC
AGGTGATCATCAAGGCACCGATTCTGGCCGTGTGGGCCATTGTGAAGATTGCGGATAAAAACTGGCAGTGGACCGCCTCC
ACAGGAGCGGCCGTGGCTGCTCTGATCCTGATGCTAAGTGTCATTGTTGTTTTCGCTCTTCCAAGTTTCCAGAGAATCCA
GCGTCTCACCGATAATCTGAACAGGGTAACACGTGAACATCTGATCGGACTTCGGGTAGTACGCGCTTATAATGCAGATC
AGTATCAGCAGGAGAAGTTCGAGCAGGCTAACGTCGAGTTGACGAATACAAACCTGTTTGCGAACCGTTTAATGACGATG
ATTGGCCCAGGTATGACCTTTATTATGTCAGGTCTGAGTGTCTCTATCTATTGGATCGGCGCTTACCTGATTAACGGGGC
GGCCGTACCAGACCGCATCACGCTGTTCTCCAATATGGTCGTATTCTCCTCTTATGCAATGCAGGTGGTTATGGCCTTTA
TGATGGTAAGTATGATATTCATCCTGATGCCTCGCGCCTCAATCTCTGCCAAACGGATCATGGAGGTTTTGAATACCGAA
TCCAGCATCGTTAATGGGCATGAGACGACTGGAGAAGAGAGCGTTATGGGGCAAGTGGAATTCCGTAATGTCAGCTTCAA
ATATCCGGACGCGGAGGAGGCCGTGCTTCGCAACATCAGCTTCACGGCGAAACGAGGCGAGACGGTTGCCTTTATTGGCG
CTACAGGCAGTGGCAAAACCAGCGTGATCAATCTGATTCCCCGTTTCTATGATGTGACCGAGGGAGAGGTACTCGTGGAC
GGTGTGAATGTCAGGAACTATAATCAGCAGGCACTCCATAACAAAATCGGGTATGTTCCTCAGAGAGCTGTACTGTTCAA
CGGTACGGTGGTATCCAACGTTTCGTACGGTGATAACGGAAGAGCAGGAGCTTCGGAGAAACTTGTCAAAGAAGCCGTTG
GTATTGCTCAAGGAACGGAGTTTGTCGAAAAAATGGATGGTCAATATCAGGGTAGAATTTCGCAAGGTGGAGCGAATGTG
TCCGGTGGTCAAAAGCAGCGGCTGTCCATTGCGCGTGCCATCTACCGTCAGCCGGAGATTTATATTTTCGATGATTCCTT
CTCGGCACTAGACTACAGAACAGACCGGATTCTGCGCTCCGCTCTCAAAAAAGAAACCGGCCACGCTACGACACTTATCG
TTGGTCAGCGCATAGGTACGATCAAAGACGCTGATCGGATTATCGTGCTGGACCAGGGAGAGATTGTAGGGAGCGGCACG
CATGAAGAGCTGATGACGAACTGCAGCACCTATCAGGAGATCGCATATTCGCAGCTTTCGAAGGAGGAACTCATACATGG
ATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(17-292)

ABC transporter (ABC_tran)

(356-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

52.421

100

0.535

Multiple sequence alignment