Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PALA20_RS30695 Genome accession   NZ_CP107064
Coordinates   6517285..6517614 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA20     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6512285..6522614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS30680 (PALA20_06068) uvrB 6513672..6515684 (-) 2013 WP_003091426.1 excinuclease ABC subunit UvrB Machinery gene
  PALA20_RS30685 (PALA20_06069) - 6515872..6517068 (+) 1197 WP_003091428.1 amino acid aminotransferase -
  PALA20_RS30695 (PALA20_06071) comEA/comE1 6517285..6517614 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PALA20_RS30700 (PALA20_06072) - 6517805..6519802 (-) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  PALA20_RS30705 (PALA20_06073) - 6519815..6520840 (-) 1026 WP_023093916.1 MraY family glycosyltransferase -
  PALA20_RS30710 (PALA20_06074) - 6520941..6521885 (-) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=640443 PALA20_RS30695 WP_003091430.1 6517285..6517614(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA20]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=640443 PALA20_RS30695 WP_003091430.1 6517285..6517614(-) (comEA/comE1) [Pseudomonas aeruginosa strain PALA20]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385