Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   PALA20_RS29995 Genome accession   NZ_CP107064
Coordinates   6359966..6360580 (+) Length   204 a.a.
NCBI ID   WP_003091196.1    Uniprot ID   Q02PH1
Organism   Pseudomonas aeruginosa strain PALA20     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6354966..6365580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS29975 (PALA20_05927) - 6356408..6357037 (+) 630 WP_003091190.1 CsiV family protein -
  PALA20_RS29980 (PALA20_05928) - 6357084..6357821 (-) 738 WP_003091193.1 S-methyl-5'-thioinosine phosphorylase -
  PALA20_RS29985 (PALA20_05929) nagZ 6357833..6358831 (-) 999 WP_003091194.1 beta-N-acetylhexosaminidase -
  PALA20_RS29990 (PALA20_05930) psrA 6359033..6359734 (-) 702 WP_003091195.1 transcriptional regulator PsrA -
  PALA20_RS29995 (PALA20_05931) dinR/lexA 6359966..6360580 (+) 615 WP_003091196.1 transcriptional repressor LexA Regulator
  PALA20_RS30000 (PALA20_05932) sulA 6360592..6361077 (+) 486 WP_003091197.1 SOS-induced cell division inhibitor SulA -
  PALA20_RS30005 (PALA20_05933) - 6361099..6361332 (-) 234 WP_003109483.1 hypothetical protein -
  PALA20_RS30010 (PALA20_05934) - 6361538..6362056 (-) 519 WP_003091199.1 DUF6586 family protein -
  PALA20_RS30015 (PALA20_05935) topA 6362163..6364769 (-) 2607 WP_003091201.1 type I DNA topoisomerase -
  PALA20_RS30020 (PALA20_05936) - 6364860..6365123 (-) 264 WP_003109484.1 DUF1653 domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22505.95 Da        Isoelectric Point: 6.4989

>NTDB_id=640438 PALA20_RS29995 WP_003091196.1 6359966..6360580(+) (dinR/lexA) [Pseudomonas aeruginosa strain PALA20]
MQKLTPRQAEILSFIKRCLEDHGFPPTRAEIAQELGFKSPNAAEEHLKALARKGAIEMTPGASRGIRIPGFEPHAANDDE
GLPVIGRVAAGAPILAEQNIEESCRINPAFFNPRADYLLRVRGMSMKDIGILDGDLLAVHVTREARNGQVVVARIGEEVT
VKRFKREGSKVWLLAENPEFAPIEVDLKEQELIIEGLSVGVIRR

Nucleotide


Download         Length: 615 bp        

>NTDB_id=640438 PALA20_RS29995 WP_003091196.1 6359966..6360580(+) (dinR/lexA) [Pseudomonas aeruginosa strain PALA20]
ATGCAGAAGCTGACGCCCCGCCAAGCCGAGATCCTCTCCTTCATCAAGCGCTGCCTGGAAGACCACGGCTTTCCGCCGAC
CCGGGCGGAAATCGCCCAGGAACTCGGCTTCAAGTCGCCCAACGCCGCCGAGGAGCACCTCAAGGCGCTGGCACGCAAGG
GCGCCATCGAAATGACTCCGGGCGCCTCTCGCGGCATCCGCATTCCCGGCTTCGAACCGCATGCCGCCAACGACGATGAG
GGCCTGCCGGTGATCGGACGGGTCGCAGCCGGCGCACCGATCCTCGCCGAACAGAACATCGAGGAATCCTGCCGGATCAA
TCCCGCCTTCTTCAATCCTCGCGCCGACTACCTGTTGCGCGTGCGCGGCATGAGCATGAAGGACATCGGCATCCTCGACG
GCGACCTGCTGGCCGTCCACGTCACCCGCGAAGCGCGCAACGGCCAGGTGGTGGTCGCGCGGATCGGCGAGGAGGTCACG
GTGAAACGCTTCAAGCGCGAAGGCAGCAAGGTCTGGCTGCTGGCGGAAAACCCTGAGTTCGCTCCGATCGAAGTCGATCT
GAAGGAGCAGGAACTGATCATCGAAGGCTTGAGCGTCGGCGTGATCCGGCGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(1-65)

Peptidase S24-like (Peptidase_S24)

(83-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02PH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.35

100

0.387