Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZJ94_RS06925 Genome accession   NZ_CP090057
Coordinates   1351810..1353501 (+) Length   563 a.a.
NCBI ID   WP_069888849.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL-J1-158     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1346810..1358501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZJ94_RS06900 (LZJ94_06900) - 1346961..1347842 (+) 882 WP_003738880.1 polyprenyl synthetase family protein -
  LZJ94_RS06905 (LZJ94_06905) - 1348041..1348241 (+) 201 WP_003719639.1 cold-shock protein -
  LZJ94_RS06910 (LZJ94_06910) dxs 1348408..1350327 (+) 1920 WP_077952833.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LZJ94_RS06915 (LZJ94_06915) - 1350324..1351148 (+) 825 WP_003738882.1 TlyA family RNA methyltransferase -
  LZJ94_RS06920 (LZJ94_06920) ahrC 1351338..1351787 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  LZJ94_RS06925 (LZJ94_06925) recN 1351810..1353501 (+) 1692 WP_069888849.1 DNA repair protein RecN Machinery gene
  LZJ94_RS06930 (LZJ94_06930) - 1353631..1354497 (+) 867 WP_069888848.1 phosphate acyltransferase -
  LZJ94_RS06935 (LZJ94_06935) buk 1354634..1355701 (+) 1068 WP_070034122.1 butyrate kinase -
  LZJ94_RS06940 (LZJ94_06940) lpdA 1355716..1357143 (+) 1428 WP_070034121.1 dihydrolipoyl dehydrogenase -
  LZJ94_RS06945 (LZJ94_06945) - 1357168..1358163 (+) 996 WP_003738888.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63532.29 Da        Isoelectric Point: 5.1316

>NTDB_id=640389 LZJ94_RS06925 WP_069888849.1 1351810..1353501(+) (recN) [Listeria monocytogenes strain FSL-J1-158]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEKAIFSVRFE
ANKMELTESGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=640389 LZJ94_RS06925 WP_069888849.1 1351810..1353501(+) (recN) [Listeria monocytogenes strain FSL-J1-158]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCATGGAGAAGAACGTTTAGAACTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGGATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGCCTGTTTCGCTCGGGGAAAAATAGTTG
CCGAATTAATGGCAAGCTTGTAACTACAGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCACAGTCAGCATG
AACATCAGGAATTAATGAATGAGGAGTTTCATTTATCCTTACTTGATCGTTTCGCTTCTGACAAAATCAAGCCAGCCCTA
ACCAAATACCAAACTAATTTCAAAGAATATCAAACAATCGAGAAAGAGTGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCGCAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATCGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATTTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGAGCTTATGCGGCAATTCAAGGG
GAGCCTGGTGGGCTGGAATTTGTTGGTGAAGCGATGCGCCAAATGGAAGCAGCAGCAAGTATTCATACGGATTATAAAGC
AGTTAGCGAGGCCATTTCTTCTAGTTACTATATGTTAGAAGATAGCATGAGCCAAATTAGGCAATCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTGAATCAAATTGAATCACGTTTGAATGATTTAAACCAATTAAAACGCAAATATGGCAAAACC
ATTGAAGATATCATTCAATACGAACAAGAAATAAGCAGCGAAATGGAAAAACTGACAGATAGTGAATCACATGTCGGGCA
TTTAGAGACCAAATTAGCAACACTTAAAGCAGAACTAACAAAACAGGCGAATACACTAACGGAAATACGTAAAAAAGCGG
CTGTTACGTTAGAAAAGCAAATCAAACAAGAATTAAATCATTTATATATGGAGAAAGCTATTTTTAGTGTACGCTTTGAA
GCAAATAAAATGGAACTAACAGAATCAGGACAAGATAGCGTTGTTTTCTATATGTCAACCAACCCGGGTGAACCGTTAAA
ACCATTAGCAAAAATCGCTTCTGGTGGGGAGTTATCTAGAATGATGTTAGCATTAAAAACCATTTTTTCTAGGCATCAAG
GAATCACCTCGATTATTTTCGATGAAGTAGATACTGGTGTAAGTGGTCGCGTTGGTCAAGCAATTGCAGAAAAAATCTAT
GCTGTTTCAGTTGGCTCACAAGTACTATGTATTAGTCATTTGCCTCAAGTCGCAGCAATGGCGAACCACCACTACTACAT
TACGAAAAAAGTTCAAAACAAACGTACCACAACTTCCGTTACAGTGCTTAAAGGGGAAGAAAAAGTAGAAGAAATCAGTC
GAATGATTGCTGGAATAGAAGTTACCGAATTAACTAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.431

100

0.536