Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PALA20_RS05315 Genome accession   NZ_CP107064
Coordinates   1111909..1112274 (-) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain PALA20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106909..1117274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA20_RS05300 (PALA20_01050) pilK 1108253..1109128 (-) 876 WP_003084594.1 type 4 fimbrial methyltransferase PilK -
  PALA20_RS05305 (PALA20_01051) pilJ 1109189..1111237 (-) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  PALA20_RS05310 (PALA20_01052) - 1111322..1111858 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PALA20_RS05315 (PALA20_01053) pilH 1111909..1112274 (-) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  PALA20_RS05320 (PALA20_01054) pilG 1112321..1112728 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PALA20_RS05325 (PALA20_01055) gshB 1112983..1113936 (+) 954 WP_003100943.1 glutathione synthase -
  PALA20_RS05330 (PALA20_01056) - 1114083..1114976 (+) 894 WP_003084580.1 TonB family protein -
  PALA20_RS05335 (PALA20_01057) - 1115025..1115594 (+) 570 WP_003084577.1 YqgE/AlgH family protein -
  PALA20_RS05340 (PALA20_01058) ruvX 1115594..1116028 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PALA20_RS05345 (PALA20_01059) pyrR 1116140..1116652 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=640356 PALA20_RS05315 WP_003084587.1 1111909..1112274(-) (pilH) [Pseudomonas aeruginosa strain PALA20]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=640356 PALA20_RS05315 WP_003084587.1 1111909..1112274(-) (pilH) [Pseudomonas aeruginosa strain PALA20]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAGTTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364