Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LZJ96_RS00770 Genome accession   NZ_CP090052
Coordinates   145059..146750 (+) Length   563 a.a.
NCBI ID   WP_014600810.1    Uniprot ID   A0A3Q0NEF3
Organism   Listeria monocytogenes strain FSL-N1-304     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 140059..151750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZJ96_RS00740 (LZJ96_00740) - 140069..140296 (+) 228 WP_061105693.1 exodeoxyribonuclease VII small subunit -
  LZJ96_RS00745 (LZJ96_00745) - 140299..141180 (+) 882 WP_014600808.1 polyprenyl synthetase family protein -
  LZJ96_RS00750 (LZJ96_00750) - 141379..141579 (+) 201 WP_003719639.1 cold-shock protein -
  LZJ96_RS00755 (LZJ96_00755) dxs 141746..143575 (+) 1830 WP_233749639.1 1-deoxy-D-xylulose-5-phosphate synthase -
  LZJ96_RS00760 (LZJ96_00760) - 143572..144396 (+) 825 WP_014601980.1 TlyA family RNA methyltransferase -
  LZJ96_RS00765 (LZJ96_00765) ahrC 144587..145036 (+) 450 WP_003722493.1 transcriptional regulator AhrC/ArgR -
  LZJ96_RS00770 (LZJ96_00770) recN 145059..146750 (+) 1692 WP_014600810.1 DNA repair protein RecN Machinery gene
  LZJ96_RS00775 (LZJ96_00775) - 146879..147745 (+) 867 WP_061105695.1 phosphate acyltransferase -
  LZJ96_RS00780 (LZJ96_00780) buk 147882..148949 (+) 1068 WP_003722496.1 butyrate kinase -
  LZJ96_RS00785 (LZJ96_00785) lpdA 148964..150391 (+) 1428 WP_061105696.1 dihydrolipoyl dehydrogenase -
  LZJ96_RS00790 (LZJ96_00790) - 150416..151411 (+) 996 WP_003722498.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63522.38 Da        Isoelectric Point: 5.1267

>NTDB_id=640334 LZJ96_RS00770 WP_014600810.1 145059..146750(+) (recN) [Listeria monocytogenes strain FSL-N1-304]
MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSADFIRHGEERLELQGLFALAEDNLACRNA
LIENGIDASDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYAAIQG
EPGGLEFVGEAMRQMETAASIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIQYEQEISSEMEKLTDSESHVGHLETKLATLKTELTKQAATLTDIRKKAAVTLEKQIKQELNQLYMEKAIFSVRFE
ANKMELTELGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVTVLKGVEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=640334 LZJ96_RS00770 WP_014600810.1 145059..146750(+) (recN) [Listeria monocytogenes strain FSL-N1-304]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCGCTTTCTTTAACTTTTCAAGAAGGGATGACGGTACT
TACGGGGGAGACCGGCGCTGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGATCAGCTGATT
TTATCCGTCACGGAGAGGAACGTTTAGAGCTTCAAGGGCTTTTTGCGCTAGCAGAGGATAACCTTGCTTGCCGAAATGCT
TTAATAGAAAATGGTATAGATGCTTCGGATGATATGGTTGTACTAGAACGCAGTCTGTTTCGCTCGGGAAAAAATAGTTG
CCGAATCAATGGCAAGCTTGTAACTACTGTTCTCTTGCGCCAAATTGGCTCGAAATTAATAGATATCCATAGTCAGCATG
AACATCAGGAATTGATGAATGAGGAGTTTCATTTATCATTACTTGATCGATTCGCTTCTGACAAAATCAAGCCAGCACTA
ACCAAGTACCAAACTAATTTCAAAGAATATCAAACGATTGAGAAAGAATGGCAAAATTGGACAAAAAATGAGCGAGAATT
AGCACAACGTCTTGATATGCTCCGTTTTCAACAACAGGAAATTGAAAATGCCAATTTGCAAGCTGGTGAAGAAGATCGTT
TGTTAGAACAAAAAAATATCTTAGCCAATTTTGAAAAACTTAACGAAAATTTACAAGGCGCTTATGCGGCGATTCAAGGC
GAGCCAGGTGGACTTGAATTCGTTGGGGAAGCGATGCGTCAAATGGAGACAGCTGCAAGTATTCATACGGATTATAAAGC
AGTTAGTGAAGCAATTTCTTCTAGCTACTATATGTTAGAAGATAGCATGAGCCAAATCAGACAGTCACTTGATCAGCTCG
AATTCCAACCAGAAGAACTTAATCAAATTGAATCGCGTTTAAATGATTTAAACCAATTGAAACGCAAATATGGTAAAACA
ATTGAAGATATCATCCAGTATGAGCAAGAAATAAGTAGCGAAATGGAAAAACTAACGGATAGTGAATCGCATGTGGGTCA
TTTAGAGACAAAATTAGCCACACTCAAAACAGAACTAACAAAACAAGCAGCTACGCTCACTGATATCCGTAAAAAAGCAG
CTGTCACATTAGAAAAACAAATTAAACAAGAATTAAATCAACTTTATATGGAGAAAGCCATTTTTAGTGTGCGTTTTGAA
GCAAACAAAATGGAACTAACAGAATTGGGACAAGATAGCGTCGTCTTTTATATGTCAACAAATCCAGGAGAACCATTAAA
ACCATTAGCAAAAATTGCTTCTGGCGGAGAGTTATCCAGAATGATGTTAGCTTTAAAAACCATTTTCTCTAGACACCAAG
GTATTACATCAATTATTTTCGATGAAGTTGATACCGGAGTAAGTGGACGCGTTGGTCAAGCGATTGCAGAAAAAATTTAT
GCTGTTTCAGTCGGCTCGCAAGTACTATGTATCAGTCATTTGCCTCAAGTAGCAGCAATGGCGAACCACCATTACTACAT
TACAAAAAAAGTCCAAAATAAACGTACAACGACTTCCGTTACAGTGCTTAAAGGAGTAGAAAAAGTAGAAGAAATCAGCC
GAATGATTGCTGGTATAGAAGTCACTGAACTAACAAAACAACATGCAAAAGAAATGATTGAACAAGCGGAAAAAGTAAAA
CAAACGTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0NEF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.604

100

0.538