Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LRO94_RS24730 Genome accession   NZ_CP090029
Coordinates   5464471..5465838 (-) Length   455 a.a.
NCBI ID   WP_032884669.1    Uniprot ID   A0A031J688
Organism   Pseudomonas sivasensis strain BsEB-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5459471..5470838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRO94_RS24705 yjiA 5459794..5460753 (-) 960 WP_179179851.1 GTPase -
  LRO94_RS24710 - 5460902..5461099 (-) 198 WP_003176208.1 YbdD/YjiX family protein -
  LRO94_RS24715 - 5461115..5463181 (-) 2067 WP_032884672.1 carbon starvation CstA family protein -
  LRO94_RS24720 - 5463356..5463724 (+) 369 WP_032884671.1 PilZ domain-containing protein -
  LRO94_RS24725 - 5463729..5464454 (-) 726 WP_179179850.1 hypothetical protein -
  LRO94_RS24730 radA 5464471..5465838 (-) 1368 WP_032884669.1 DNA repair protein RadA Machinery gene
  LRO94_RS24735 - 5465874..5466413 (-) 540 WP_032884667.1 ankyrin repeat domain-containing protein -
  LRO94_RS24740 katB 5466469..5468010 (-) 1542 WP_032884665.1 catalase KatB -
  LRO94_RS24745 mscL 5468298..5468714 (+) 417 WP_032884664.1 large-conductance mechanosensitive channel protein MscL -
  LRO94_RS24750 - 5468761..5469537 (-) 777 WP_179179849.1 ferredoxin--NADP reductase -
  LRO94_RS24755 - 5469909..5470619 (+) 711 WP_032884662.1 LuxR family transcriptional regulator -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48759.29 Da        Isoelectric Point: 6.8987

>NTDB_id=640319 LRO94_RS24730 WP_032884669.1 5464471..5465838(-) (radA) [Pseudomonas sivasensis strain BsEB-1]
MAKAKRMYGCTECGATFPKWAGQCGECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA
TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPPGLQVIGVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=640319 LRO94_RS24730 WP_032884669.1 5464471..5465838(-) (radA) [Pseudomonas sivasensis strain BsEB-1]
ATGGCAAAGGCCAAGCGCATGTACGGCTGCACGGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCGGCGAATG
CGGTGCGTGGAACACCCTGACCGAAACCATGATCGAAAGCGGCGGCGCTGCGGCGCCCACGGGCCGCGCCGGCTGGACCG
GGCAGCAGGCGCAGATCAAGACCCTGGCCGAAGTCAGCGTCGAAGAAATCCCGCGTTTCTCCACCGCCTCAGGTGAACTG
GACCGTGTGCTGGGCGGCGGCCTGGTGGACGGCTCTGTGGTGCTGATCGGCGGCGACCCTGGCATCGGTAAATCGACCAT
CCTCCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGTTATATGTCACCGGTGAAGAATCCCAGCAACAAGTGG
CCATGCGCGCACGCCGTCTTGGCTTGCCTCAGGATCAGTTGCGGGTCATGACCGAGACTTGCATCGAAAGCATCATCGCC
ACGGCCCGTATCGAAAAGCCAAAGGTGATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAGTTGCAATCGGCGCC
GGGTGGTGTGTCCCAGGTGCGCGAAAGTGCAGCGCTACTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATCTTCCTGG
TCGGCCACGTGACTAAAGAAGGCGCGCTGGCCGGGCCGCGAGTGTTGGAGCATATGGTCGACACCGTTCTGTACTTCGAA
GGCGAGTCCGATGGTCGACTGCGCTTGCTGCGGGCGGTGAAAAACCGTTTCGGCGCAGTGAACGAACTGGGTGTATTCGC
CATGACTGACCGGGGACTGAAAGAAGTCTCCAACCCTTCGGCGATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTGATGGCGACGTGGGAAGGCACCCGACCGATGTTGGTGGAAGTCCAGGCATTGGTGGATGACAGCCATTTGGCC
AACCCGCGCCGGGTCACGCTGGGGCTGGATCAGAACCGCCTGGCGATGTTGCTGGCGGTGTTACACCGTCATGGCGGCAT
TCCGACCCACGATCAGGATGTGTTCCTCAACGTGGTGGGTGGGGTCAAGGTGCTGGAGACCGCATCCGACCTGGCCTTGA
TGGCGGCGGTGATGTCCAGCTTGCGTAACCGGCCTCTGCCGCACGACCTCTTGGTATTTGGGGAGGTCGGCCTGTCCGGC
GAAGTGCGTCCGGTGCCGAGCGGTCAGGAGCGCTTGAAGGAAGCGGCCAAGCACGGCTTCAAACGCGCGATTGTGCCCAA
GGGCAACGCGCCGAAGGAAATGCCGCCAGGATTGCAGGTGATTGGGGTCACGCGCCTGGAACAGGCATTGGATGCACTTT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(80-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A031J688

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.672

100

0.499
  radA Streptococcus mitis SK321

47.149

100

0.473
  radA Streptococcus pneumoniae Rx1

46.93

100

0.47
  radA Streptococcus pneumoniae D39

46.93

100

0.47
  radA Streptococcus pneumoniae R6

46.93

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.93

100

0.47
  radA Streptococcus mitis NCTC 12261

46.93

100

0.47