Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   ODQ18_RS15960 Genome accession   NZ_CP107039
Coordinates   3068134..3068928 (+) Length   264 a.a.
NCBI ID   WP_003226939.1    Uniprot ID   A0ABU0V6L5
Organism   Bacillus subtilis strain 11060     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3063134..3073928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS15940 (ODQ18_15940) walR 3063376..3064083 (+) 708 WP_003244363.1 cell wall metabolism DNA-binding response regulator WalR -
  ODQ18_RS15945 (ODQ18_15945) walK 3064091..3065926 (+) 1836 WP_009968432.1 cell wall metabolism sensor histidine kinase WalK -
  ODQ18_RS15950 (ODQ18_15950) walH 3065916..3067283 (+) 1368 WP_041850604.1 WalRK two-component regulatory system regulator WalH -
  ODQ18_RS15955 (ODQ18_15955) walI 3067270..3068112 (+) 843 WP_003244037.1 WalRK two-component regulatory system regulator WalI -
  ODQ18_RS15960 (ODQ18_15960) vicX 3068134..3068928 (+) 795 WP_003226939.1 MBL fold metallo-hydrolase Regulator
  ODQ18_RS15965 (ODQ18_15965) htrA 3069010..3070212 (+) 1203 WP_041850281.1 serine protease HtrC Regulator
  ODQ18_RS15970 (ODQ18_15970) - 3070232..3070361 (+) 130 Protein_3082 hypothetical protein -
  ODQ18_RS15975 (ODQ18_15975) - 3070380..3070541 (+) 162 Protein_3083 ATP-binding protein -
  ODQ18_RS15980 (ODQ18_15980) rocR 3070523..3071908 (-) 1386 WP_041850282.1 arginine utilization regulatory protein RocR -
  ODQ18_RS15985 (ODQ18_15985) rocD 3072149..3073354 (+) 1206 WP_041850283.1 ornithine aminotransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 29283.28 Da        Isoelectric Point: 5.8036

>NTDB_id=640315 ODQ18_RS15960 WP_003226939.1 3068134..3068928(+) (vicX) [Bacillus subtilis strain 11060]
MSLQFSVLASGSTGNAFYLETEDHAFLVDAGLSGKAMDGLMAQIGRKLDDVDGIFVTHEHSDHIKGLGVVARKYKLPIYA
NEKTWKAMENQIGKIDTDQKFVFPMETVKSFGGLDVESFGVSHDAAEPMFYVFHYNGRKLALMTDTGYVSDRMKGIIRSA
NVFVFESNHDVGMLQMGRYPWSIKRRILSDVGHVSNEDAALAMTDVIGDETSRIYLAHLSQDNNMKELARMSVQQTLASK
GFVTGETFDLYDTDPKKATPLCAV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=640315 ODQ18_RS15960 WP_003226939.1 3068134..3068928(+) (vicX) [Bacillus subtilis strain 11060]
ATGAGCTTGCAATTTAGCGTACTTGCGAGCGGGAGTACGGGAAATGCGTTTTACCTCGAAACAGAGGATCACGCATTTTT
AGTGGACGCCGGTTTGAGCGGAAAAGCCATGGATGGGCTGATGGCGCAGATCGGGCGTAAGCTGGATGATGTAGACGGCA
TTTTTGTGACGCATGAGCATAGTGACCATATTAAGGGCCTTGGTGTCGTCGCCAGAAAGTACAAGCTGCCGATCTATGCG
AATGAGAAGACTTGGAAAGCGATGGAGAATCAAATCGGCAAAATTGACACCGATCAAAAGTTTGTATTTCCAATGGAGAC
GGTGAAGTCGTTTGGCGGACTTGATGTTGAATCGTTTGGCGTCTCCCACGATGCGGCGGAACCGATGTTTTATGTGTTCC
ATTATAACGGCCGAAAGCTCGCGTTAATGACAGATACGGGATATGTCAGCGACCGGATGAAAGGCATTATCCGTTCAGCG
AATGTATTTGTGTTTGAAAGCAATCACGATGTCGGTATGCTGCAAATGGGGAGATACCCATGGAGCATTAAGCGGCGGAT
TTTAAGTGACGTCGGGCACGTGTCAAATGAAGATGCTGCCTTGGCGATGACGGATGTCATTGGCGATGAGACGTCTCGTA
TTTACCTGGCGCATTTGAGCCAGGACAACAACATGAAGGAGCTGGCAAGAATGTCTGTGCAGCAGACATTGGCTTCTAAA
GGATTTGTGACGGGTGAGACATTTGACTTATACGACACCGATCCGAAGAAGGCCACTCCGCTTTGCGCTGTATAA

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(12-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

53.435

99.242

0.53