Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   ODQ18_RS15295 Genome accession   NZ_CP107039
Coordinates   2952485..2952715 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain 11060     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2947485..2957715
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS15285 (ODQ18_15285) spoVT 2948210..2948746 (-) 537 WP_003218365.1 stage V sporulation protein T -
  ODQ18_RS15290 (ODQ18_15290) mfd 2948882..2952415 (-) 3534 WP_014478601.1 transcription-repair coupling factor -
  ODQ18_RS15295 (ODQ18_15295) subA/fin 2952485..2952715 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  ODQ18_RS15300 (ODQ18_15300) pth 2952775..2953341 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  ODQ18_RS15305 (ODQ18_15305) rplYB 2953448..2954062 (-) 615 WP_043940261.1 50S ribosomal protein L25/general stress protein Ctc -
  ODQ18_RS15310 (ODQ18_15310) prsS 2954148..2955101 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  ODQ18_RS15315 (ODQ18_15315) glmU 2955124..2956494 (-) 1371 WP_041850257.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  ODQ18_RS15320 (ODQ18_15320) spoVG 2956687..2956980 (-) 294 WP_003218346.1 septation regulator SpoVG -
  ODQ18_RS15325 (ODQ18_15325) ridA 2957175..2957552 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=640307 ODQ18_RS15295 WP_003243417.1 2952485..2952715(-) (subA/fin) [Bacillus subtilis strain 11060]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=640307 ODQ18_RS15295 WP_003243417.1 2952485..2952715(-) (subA/fin) [Bacillus subtilis strain 11060]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1