Detailed information NTG0640301

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: ODQ18_RS14000
• Genome accession: NZ_CP107039
• Coordinates: 2715282..2716403 (-)
• Length: 373 a.a.
• NCBI ID: WP_015715201.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain 11060
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2710282..2721403

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ODQ18_RS13980 (ODQ18_13980)	znuC	2710792..2711487 (-)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-
ODQ18_RS13985 (ODQ18_13985)	znuA	2711542..2712501 (-)	960	WP_015715203.1	metal ABC transporter substrate-binding protein	-
ODQ18_RS13990 (ODQ18_13990)	ycdG	2712689..2714374 (-)	1686	WP_015715202.1	glycoside hydrolase family 13 protein	-
ODQ18_RS13995 (ODQ18_13995)	ycdF	2714399..2715175 (-)	777	WP_003234739.1	SDR family oxidoreductase	-
ODQ18_RS14000 (ODQ18_14000)	rapF	2715282..2716403 (-)	1122	WP_015715201.1	response regulator aspartate phosphatase RapJ	Regulator
ODQ18_RS14005 (ODQ18_14005)	cwlK	2716526..2717029 (+)	504	WP_015715200.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
ODQ18_RS14010 (ODQ18_14010)	ycdC	2717037..2718398 (-)	1362	WP_041520542.1	YcdB/YcdC domain-containing protein	-
ODQ18_RS14015 (ODQ18_14015)	ycdB	2718585..2720003 (-)	1419	WP_015715198.1	YcdB/YcdC domain-containing protein	-
ODQ18_RS14020 (ODQ18_14020)	-	2720177..2720308 (+)	132	WP_003246334.1	hypothetical protein	-
ODQ18_RS14025 (ODQ18_14025)	ycdA	2720331..2721395 (+)	1065	WP_003234750.1	DUF4352 domain-containing protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44400.29 Da
• Isoelectric Point: 4.8344

>NTDB_id=640301 ODQ18_RS14000 WP_015715201.1 2715282..2716403(-) (rapF) [Bacillus subtilis strain 11060]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGSGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=640301 ODQ18_RS14000 WP_015715201.1 2715282..2716403(-) (rapF) [Bacillus subtilis strain 11060]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCGTTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTACTGGAATACTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCATACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAGGCAGTAGAGGCTTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAGCGGCGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGACAGCTTCTTGCTGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405