Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ODQ18_RS10280 Genome accession   NZ_CP107039
Coordinates   1976592..1977335 (-) Length   247 a.a.
NCBI ID   WP_003233230.1    Uniprot ID   G4NRP4
Organism   Bacillus subtilis strain 11060     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971592..1982335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS10260 (ODQ18_10260) - 1971972..1973363 (+) 1392 WP_080332595.1 hypothetical protein -
  ODQ18_RS10265 (ODQ18_10265) sndC 1973435..1974625 (+) 1191 WP_015715606.1 N-acetyl amino acid acetylase SndC -
  ODQ18_RS10270 (ODQ18_10270) ecsC 1974643..1975353 (-) 711 WP_015715605.1 EcsC family protein -
  ODQ18_RS10275 (ODQ18_10275) ecsB 1975373..1976599 (-) 1227 WP_017695369.1 ABC transporter permease EcsB -
  ODQ18_RS10280 (ODQ18_10280) pptA 1976592..1977335 (-) 744 WP_003233230.1 ABC transporter ATP-binding protein EcsA Regulator
  ODQ18_RS10285 (ODQ18_10285) hinT 1977822..1978259 (+) 438 WP_003233231.1 HIT family protein -
  ODQ18_RS10290 (ODQ18_10290) serC 1978406..1979485 (+) 1080 WP_041851021.1 3-phosphoserine/phosphohydroxythreonine transaminase -
  ODQ18_RS10295 (ODQ18_10295) trpP 1979610..1980128 (+) 519 WP_003233236.1 tryptophan transporter TrpP -
  ODQ18_RS10300 (ODQ18_10300) - 1980202..1980393 (-) 192 WP_014476318.1 hypothetical protein -
  ODQ18_RS10305 (ODQ18_10305) yhaH 1980522..1980878 (+) 357 WP_003245875.1 YtxH domain-containing protein -
  ODQ18_RS10310 (ODQ18_10310) scoC 1981056..1981667 (+) 612 WP_003239501.1 HTH-type transcriptional regulator Hpr -
  ODQ18_RS10315 (ODQ18_10315) yhaI 1981664..1982005 (-) 342 WP_009966921.1 YhaI family protein -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27722.20 Da        Isoelectric Point: 5.9114

>NTDB_id=640279 ODQ18_RS10280 WP_003233230.1 1976592..1977335(-) (pptA) [Bacillus subtilis strain 11060]
MSLLSVKDLTGGYTRNPVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIELNGKTFAEDPEGYRSQFTY
IPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKEFRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDE
PFLGLDPLAINALLERMNEAKKGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELT
KEDAGHE

Nucleotide


Download         Length: 744 bp        

>NTDB_id=640279 ODQ18_RS10280 WP_003233230.1 1976592..1977335(-) (pptA) [Bacillus subtilis strain 11060]
ATGTCTCTGCTATCGGTAAAAGACTTGACCGGCGGATATACAAGGAATCCGGTTTTAAAAAACGTATCATTCACCCTTGA
ACCGAATCAAATTGTTGGCTTAATCGGGCTGAATGGTGCTGGTAAAAGTACAACAATCAGACACATCATCGGGCTGATGG
ACCCGCATAAAGGTTCAATCGAATTAAACGGTAAAACGTTTGCTGAGGATCCGGAAGGCTACCGTTCACAATTTACCTAT
ATACCTGAAACACCTGTTTTATACGAAGAATTGACGCTGATGGAGCATCTTGAACTAACAGCCATGGCATATGGACTGTC
AAAAGAAACGATGGAGAAAAGGCTGCCTCCGCTTTTAAAGGAATTCCGAATGGAAAAGAGGCTGAAGTGGTTCCCGGCCC
ATTTTTCTAAAGGAATGAAGCAGAAGGTTATGATTATGTGCGCATTTTTGGCAGAGCCTGCGCTCTACATTATTGATGAG
CCTTTTCTAGGGCTTGATCCGCTTGCCATTAACGCGCTGCTTGAGCGGATGAATGAAGCGAAAAAGGGCGGGGCGAGCGT
GCTGATGTCAACGCACATTTTGGCAACGGCAGAACGCTATTGCGATTCGTTTATTATTTTACATAACGGCGAGGTGCGGG
CGCGCGGCACGCTGTCAGAGCTCAGAGAGCAGTTTGGAATGAAGGACGCGGCGCTGGACGATTTGTATCTTGAGCTTACA
AAGGAAGACGCTGGCCATGAATAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(19-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NRP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

56.904

96.761

0.551
  pptA Streptococcus thermophilus LMD-9

56.485

96.761

0.547