Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   LWM38_RS09410 Genome accession   NZ_CP090019
Coordinates   2094847..2096235 (-) Length   462 a.a.
NCBI ID   WP_017056505.1    Uniprot ID   A0A4U2D6J2
Organism   Vibrio kanaloae strain KH-4     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089847..2101235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS09375 (LWM38_09375) moaE 2090079..2090552 (-) 474 WP_046222691.1 molybdopterin synthase catalytic subunit MoaE -
  LWM38_RS09380 (LWM38_09380) moaD 2090555..2090800 (-) 246 WP_017054954.1 molybdopterin synthase sulfur carrier subunit -
  LWM38_RS09385 (LWM38_09385) moaC 2090797..2091276 (-) 480 WP_017054953.1 cyclic pyranopterin monophosphate synthase MoaC -
  LWM38_RS09390 (LWM38_09390) moaB 2091288..2091800 (-) 513 WP_010437177.1 molybdenum cofactor biosynthesis protein B -
  LWM38_RS09395 (LWM38_09395) moaA 2092157..2093146 (-) 990 WP_137008757.1 GTP 3',8-cyclase MoaA -
  LWM38_RS09400 (LWM38_09400) - 2093481..2094368 (+) 888 WP_017056507.1 YvcK family protein -
  LWM38_RS09405 (LWM38_09405) luxU 2094479..2094823 (-) 345 WP_017056506.1 quorum-sensing phosphorelay protein LuxU -
  LWM38_RS09410 (LWM38_09410) luxO 2094847..2096235 (-) 1389 WP_017056505.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  LWM38_RS09415 (LWM38_09415) uvrB 2096539..2098569 (-) 2031 WP_233893297.1 excinuclease ABC subunit UvrB -
  LWM38_RS09425 (LWM38_09425) rsxA 2099516..2100094 (+) 579 WP_046222689.1 electron transport complex subunit RsxA -
  LWM38_RS09430 (LWM38_09430) rsxB 2100097..2100690 (+) 594 WP_046222688.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51777.37 Da        Isoelectric Point: 6.5096

>NTDB_id=640261 LWM38_RS09410 WP_017056505.1 2094847..2096235(-) (luxO) [Vibrio kanaloae strain KH-4]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSENPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENRL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKP

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=640261 LWM38_RS09410 WP_017056505.1 2094847..2096235(-) (luxO) [Vibrio kanaloae strain KH-4]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCTTCGGTCGCAGCGTTGTATCG
CTCTTATCTGACACCGCTCGAAATTGATATCAACATTGTCGGCACAGGTCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGATCTAATTTTGTTAGATCTGCGTCTTCCTGATATGACGGGTATGGACGTACTATTTGCTGTAAAACAAAAATAC
CCTGAAGTCCCCGTTATCTTCATGACGGCTCATGGCTCGATCGATACCGCCGTAGAAGCCATGCGTCATGGTTCTCAAGA
TTTCCTTATTAAACCTTGTGAAGCCGACCGACTCCGTATTACGGTGAATAACGCGATACGCAAAGCCACTAAACTTAAGA
ACAGCTCTGAAAATCCGGGTAATCAAAACTACCAAGGATTCATCGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACC
ATCGATTCTGCCGCATCAAGTAAGGCGAGTATTTTTATCACAGGTGAAAGTGGTACCGGTAAAGAAGTATGTGCAGAAGC
CATTCATGCAGCGAGTAAGCGTGGTGATAAGCCTTTCATTGCGATTAACTGCGCGGCTATCCCTAAAGATTTGATTGAAA
GTGAGCTGTTTGGTCACGTCAAAGGTGCCTTTACGGGCGCAGCAACCGATCGCCAAGGTGCTGCTGAACTAGCAGATGGT
GGAACCCTGTTCCTCGATGAGTTATGCGAAATGGATCTTGAATTGCAAACCAAGCTTCTGCGTTTCATTCAAACCGGCAC
CTTCCAAAAAGTCGGTTCTTCAAAAATGAAGAGCGTTGATGTGCGCTTTGTTTGCGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATCCCTCTTCACTTGCCGCCACTGCGTGAG
CGTGGGGAAGATGTCATCGAGATCGCATACTCGTTACTAGGCTACATGTCGGTTGAGGAAGGTAAGGCTTTCGTACGCTT
TGCTCAGGAAGTGTTGGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTACGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTCCCACCTCCACTGAACCAGCCGATTGAGAATCGTCTG
CGACTGAAAGAGAAGCAGAATGAAGACATCACTGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAGGCCATAAAAGCGTGTGACGGTAATATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATTTACCGTA
AATTGCAAACGTGGAATGCGAAGCCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4U2D6J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.607

96.97

0.84