Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   ODQ18_RS09000 Genome accession   NZ_CP107039
Coordinates   1732406..1733542 (-) Length   378 a.a.
NCBI ID   WP_015252291.1    Uniprot ID   -
Organism   Bacillus subtilis strain 11060     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727406..1738542
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS08960 (ODQ18_08960) xre 1727739..1728080 (+) 342 WP_003232719.1 HTH-type transcriptional regulator Xre -
  ODQ18_RS08965 (ODQ18_08965) xkdA 1728243..1728839 (+) 597 WP_003232721.1 ImmA/IrrE family metallo-endopeptidase -
  ODQ18_RS08970 (ODQ18_08970) xpdC 1728883..1729719 (-) 837 WP_003245071.1 manganese catalase family protein -
  ODQ18_RS08975 (ODQ18_08975) pghB 1729796..1730398 (-) 603 WP_038828723.1 poly-gamma-glutamate hydrolase family protein -
  ODQ18_RS08980 (ODQ18_08980) yjqA 1730503..1730880 (+) 378 WP_041850940.1 PH domain-containing protein -
  ODQ18_RS08985 (ODQ18_08985) xlyB 1730920..1731873 (-) 954 WP_041850941.1 N-acetylmuramoyl-L-alanine amidase -
  ODQ18_RS08990 (ODQ18_08990) yjpA 1731994..1732251 (+) 258 WP_003232731.1 YciI family protein -
  ODQ18_RS08995 (ODQ18_08995) phrA 1732282..1732416 (-) 135 WP_003245487.1 phosphatase RapA inhibitor PhrA -
  ODQ18_RS09000 (ODQ18_09000) rapC 1732406..1733542 (-) 1137 WP_015252291.1 response regulator aspartate phosphatase RapA Regulator
  ODQ18_RS09005 (ODQ18_09005) yjoB 1733687..1734958 (-) 1272 WP_015715725.1 ATPase YjoB -
  ODQ18_RS09010 (ODQ18_09010) bstD 1735107..1735571 (+) 465 WP_015715724.1 DinB family protein -
  ODQ18_RS09015 (ODQ18_09015) yjnA 1735793..1736557 (+) 765 WP_014476525.1 sulfite exporter TauE/SafE family protein -
  ODQ18_RS09020 (ODQ18_09020) uxaA 1736596..1738089 (-) 1494 WP_015715723.1 UxaA family hydrolase -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45046.23 Da        Isoelectric Point: 4.7218

>NTDB_id=640261 ODQ18_RS09000 WP_015252291.1 1732406..1733542(-) (rapC) [Bacillus subtilis strain 11060]
MRMKQTIPSSYVGLKINEWYTHIRQFHVAEAERVKLEVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPFGEDTSQLE
FSELLEDIEGNQYKLTGLLEYYFNFFRGMYEFKQKMFVSAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQMYETYTVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKKEGNPRLISSALYNLGNCYEKMGELQK
AAEYFEKSVSICKSEKFDNLPHSIYSLTQVLYKQKNDAEAQKKYREGLEIARQYSDELFVELFQFLHALYGKNIDTESVS
HTFQFLEEHMLYPYIEELAHDAAQFYIENGQPEKALSFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=640261 ODQ18_RS09000 WP_015252291.1 1732406..1733542(-) (rapC) [Bacillus subtilis strain 11060]
TTGAGGATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATGGTATACTCATATCCGGCAGTTCCA
CGTCGCTGAAGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAGAAGACCAAGATTTGCTGCTGT
ATTATTCTTTAATGGAGTTCAGGCACCGTGTCATGCTGGATTACATTAAGCCTTTTGGAGAGGACACGTCGCAGCTAGAG
TTTTCAGAATTGTTAGAAGACATCGAAGGGAATCAGTACAAGCTGACAGGGCTTCTCGAATATTACTTTAATTTTTTTCG
AGGAATGTATGAATTTAAGCAGAAGATGTTTGTCAGTGCCATGATGTATTATAAACGGGCAGAAAAGAATCTTGCCCTCG
TCTCGGATGATATTGAGAAAGCAGAGTTTGCTTTTAAAATGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCG
ATGAGCTACGCCGTTCAGGCATTAGAAACATACCAAATGTATGAAACGTACACCGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGTAATTATGATGATATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTGGCTTTAGATCTTGCAAAGA
AAGAAGGCAATCCCCGCCTGATCAGTTCTGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAACTGCAAAAG
GCAGCCGAATACTTTGAGAAATCTGTTTCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCATTCTATCTACTCTTT
AACACAAGTTCTGTATAAACAAAAAAATGACGCCGAAGCGCAAAAAAAGTATCGTGAAGGATTGGAAATCGCCCGTCAAT
ACAGTGATGAATTATTTGTGGAGCTTTTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGAATCGGTCTCA
CACACCTTTCAATTTCTTGAAGAACATATGCTGTATCCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATAT
AGAAAACGGACAGCCCGAAAAAGCACTTTCATTTTATGAGAAAATGGTGCACGCACAAAAACAAATCCAGAGAGGAGATT
GTTTATATGAAATCTAA

Domains

Predicted by InterProScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)

Tetratricopeptide repeat (TPR_12)

(221-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.947

99.471

0.447
  rapF Bacillus subtilis subsp. subtilis str. 168

41.689

100

0.418