Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   LWM38_RS06530 Genome accession   NZ_CP090019
Coordinates   1410548..1411972 (-) Length   474 a.a.
NCBI ID   WP_233895220.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1405548..1416972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS06505 (LWM38_06505) - 1406141..1406794 (+) 654 WP_233895216.1 thiopurine S-methyltransferase -
  LWM38_RS06510 (LWM38_06510) purT 1406924..1408099 (-) 1176 WP_233895218.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  LWM38_RS06515 (LWM38_06515) cdd 1408267..1409154 (-) 888 WP_102506892.1 cytidine deaminase -
  LWM38_RS06520 (LWM38_06520) - 1409471..1410148 (-) 678 WP_046224077.1 LrgB family protein -
  LWM38_RS06525 (LWM38_06525) - 1410151..1410522 (-) 372 WP_017057447.1 CidA/LrgA family protein -
  LWM38_RS06530 (LWM38_06530) sbcB 1410548..1411972 (-) 1425 WP_233895220.1 exodeoxyribonuclease I Machinery gene
  LWM38_RS06535 (LWM38_06535) - 1412180..1413028 (-) 849 WP_017057445.1 sterol desaturase family protein -
  LWM38_RS06540 (LWM38_06540) - 1413083..1414096 (-) 1014 WP_233895222.1 DUF2804 domain-containing protein -
  LWM38_RS06545 (LWM38_06545) - 1414244..1415278 (+) 1035 WP_233895224.1 AraC family transcriptional regulator -
  LWM38_RS06550 (LWM38_06550) - 1415283..1416233 (-) 951 WP_233895399.1 chromosome partitioning protein ParA -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54614.93 Da        Isoelectric Point: 4.9668

>NTDB_id=640256 LWM38_RS06530 WP_233895220.1 1410548..1411972(-) (sbcB) [Vibrio kanaloae strain KH-4]
MSSDNQPTYFFFDYETWGVSPAKDRPSQFAGVRTDQDFNVIGEPLVIYCQPPADYLPAPEAALITGITPQKAMTQGLPEP
EFIAKIHAELAKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRAVHALRPEGIVWPENDEGFP
SFKLEHLSVANGIEHENAHDAMADVIATTELAKKLKAAQPKMFDYLYNMRHKRKLNELVDIVTMTPLMHVSGMFGRDCNY
TSWIVPMAWHPTNQNAVIVVDLAKDPTPLLDLDSEALRNRLYTKRTELAEDELPVPIKLVHLNKCPILAPAKTLTAENAE
TIGIDRQQCLKNLALLREHPEIREKLIGLYSQEREYEKSDDVDTHLYDGFFSPADKTAMNIIRETDPNNLAALDITFSDE
RIKPLLFRYRARHFPWTLDESEQLKWANHCREFYESRLEEYMLNLENLAHEHESDEKKMAILKAVYQYVEKLAS

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=640256 LWM38_RS06530 WP_233895220.1 1410548..1411972(-) (sbcB) [Vibrio kanaloae strain KH-4]
ATGAGTTCAGATAATCAGCCAACCTACTTCTTTTTCGATTACGAAACATGGGGCGTGAGCCCGGCAAAAGACCGTCCAAG
TCAGTTTGCGGGGGTTCGTACCGACCAAGATTTCAATGTTATCGGAGAGCCTTTGGTTATCTATTGCCAGCCTCCTGCTG
ATTATCTGCCTGCACCTGAGGCCGCATTGATCACTGGTATCACGCCACAAAAAGCAATGACTCAAGGCCTACCTGAACCT
GAGTTTATCGCTAAGATTCATGCCGAACTTGCTAAGCCAAACACCACAAGCCTTGGCTACAACAGCATCCGATTCGATGA
CGAAGTAACGAGATACACCTGTTACCGTAACTTCATTGATCCGTATGCATGGAGTTGGCAAAACGGTAACTCACGCTGGG
ATCTACTCGACGTGATGCGCGCCGTACATGCACTTCGCCCTGAAGGTATTGTTTGGCCAGAGAATGACGAAGGCTTCCCA
AGTTTCAAACTGGAACACCTCTCTGTGGCAAATGGCATTGAACACGAAAACGCGCACGATGCGATGGCCGATGTTATCGC
AACCACCGAATTAGCGAAGAAGCTTAAAGCCGCACAACCTAAAATGTTTGATTACCTCTATAACATGCGCCACAAGCGTA
AATTGAATGAGTTAGTCGACATCGTAACCATGACACCTCTAATGCACGTATCAGGCATGTTCGGCCGTGATTGTAATTAC
ACCAGCTGGATTGTGCCTATGGCTTGGCACCCAACCAACCAAAATGCCGTTATCGTGGTGGATTTAGCAAAAGATCCAAC
ACCTTTACTTGACCTAGATTCAGAAGCTTTACGTAACAGGCTCTATACTAAGCGCACTGAACTTGCTGAAGACGAGTTAC
CAGTACCAATCAAATTGGTTCATTTAAACAAGTGCCCTATTCTTGCGCCAGCAAAAACACTGACCGCAGAAAACGCGGAA
ACTATTGGTATCGACCGTCAGCAATGTTTGAAAAACTTGGCACTGTTACGCGAACATCCAGAAATACGTGAAAAATTGAT
TGGTTTGTACTCACAAGAAAGAGAGTACGAGAAGAGTGACGATGTCGACACTCACCTTTACGATGGTTTCTTCTCACCAG
CCGATAAAACGGCGATGAACATCATTCGTGAAACAGACCCGAACAACTTGGCGGCTTTAGATATTACTTTTAGTGACGAA
CGAATTAAGCCTTTGTTATTCCGTTATCGCGCTCGCCACTTCCCATGGACGCTCGACGAATCTGAACAATTGAAATGGGC
GAACCATTGTCGTGAGTTCTATGAGAGCCGCTTAGAAGAGTACATGCTGAATCTAGAAAATCTCGCGCACGAACATGAAA
GTGACGAGAAGAAAATGGCGATCTTAAAGGCGGTTTATCAGTACGTTGAAAAGTTAGCTAGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

77.167

99.789

0.77