Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   LWM38_RS06490 Genome accession   NZ_CP090019
Coordinates   1402647..1403828 (-) Length   393 a.a.
NCBI ID   WP_137008072.1    Uniprot ID   -
Organism   Vibrio kanaloae strain KH-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1397647..1408828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS06475 (LWM38_06475) - 1398088..1398981 (-) 894 WP_017057457.1 LysR family transcriptional regulator -
  LWM38_RS06480 (LWM38_06480) - 1399145..1400029 (+) 885 WP_233895208.1 Vmh family MBL fold metallo-hydrolase -
  LWM38_RS06485 (LWM38_06485) - 1400455..1402503 (+) 2049 WP_046224072.1 response regulator -
  LWM38_RS06490 (LWM38_06490) cqsA 1402647..1403828 (-) 1182 WP_137008072.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  LWM38_RS06495 (LWM38_06495) ihfA 1404632..1404928 (+) 297 WP_004734853.1 integration host factor subunit alpha -
  LWM38_RS06500 (LWM38_06500) - 1405040..1405816 (-) 777 WP_017057452.1 RelA/SpoT domain-containing protein -
  LWM38_RS06505 (LWM38_06505) - 1406141..1406794 (+) 654 WP_233895216.1 thiopurine S-methyltransferase -
  LWM38_RS06510 (LWM38_06510) purT 1406924..1408099 (-) 1176 WP_233895218.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 44043.28 Da        Isoelectric Point: 6.9596

>NTDB_id=640255 LWM38_RS06490 WP_137008072.1 1402647..1403828(-) (cqsA) [Vibrio kanaloae strain KH-4]
MSNKFENKPLPSFIEERLNFYVQDLITPNKNQRHLVLGKRPKSNAVVMQSNDYLSLSHNVNIQKAHRDAISKHDDNVVMS
AIFLQDEQSKPAFETELAAYVGMETCLLSQSGWAANIGLLQTICPPNTPVYIDFFAHMSLWEGIRAAGAHAYPFMHNNMN
HLRKQIQRNGSGVIVVDSVYSTIGTIAPLRDIYEMAQEFDCALVVDESHSLGTHGKNGAGLVQALGLTNKVDFITVSLAK
TFAYRAGAILGPKRLSETLPFVAYPAIFSSTVLPQEVIRLEKTLEVIKDSDDKRDTLFKRVKTLTTGLKQIGFNIRSESQ
IVALECGSERNTEHVRDFLEERNVFGAVFCRPATGKNKNIIRFSVNADMTSQDIDRVLRVCDEAFHHPELEFI

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=640255 LWM38_RS06490 WP_137008072.1 1402647..1403828(-) (cqsA) [Vibrio kanaloae strain KH-4]
ATGAGTAATAAATTTGAAAATAAACCATTACCTTCCTTTATCGAAGAACGCTTGAACTTTTATGTTCAAGACCTCATTAC
CCCAAACAAAAACCAAAGGCACTTGGTATTAGGGAAACGCCCCAAGTCGAACGCCGTGGTTATGCAGAGTAATGACTACC
TATCACTATCGCATAACGTGAACATCCAAAAAGCACATAGGGATGCGATCTCAAAGCACGATGATAATGTAGTGATGTCT
GCCATATTTTTGCAAGATGAACAATCTAAGCCAGCGTTTGAAACCGAACTCGCAGCCTATGTCGGGATGGAAACCTGTTT
GCTGTCCCAATCTGGTTGGGCTGCGAATATTGGGCTGTTGCAAACTATCTGCCCACCTAATACTCCGGTGTATATCGATT
TCTTTGCACACATGTCCCTATGGGAAGGAATTCGTGCTGCTGGAGCTCATGCTTACCCGTTTATGCACAACAACATGAAT
CACCTGCGTAAACAGATCCAACGTAATGGCTCAGGCGTGATTGTGGTCGACTCTGTTTATAGCACCATTGGCACTATTGC
CCCACTCCGCGACATCTACGAAATGGCGCAAGAGTTTGACTGTGCTTTGGTCGTTGATGAGTCGCACTCGTTAGGTACTC
ATGGTAAAAATGGGGCGGGTTTGGTTCAAGCTTTAGGGCTGACCAACAAAGTGGATTTTATTACCGTGAGTTTAGCCAAG
ACATTCGCTTATCGTGCCGGTGCCATTCTGGGACCTAAACGGCTATCAGAGACGCTTCCATTTGTCGCTTACCCCGCGAT
TTTCAGCTCTACCGTGCTGCCACAAGAAGTCATTCGCTTAGAAAAAACGTTAGAGGTCATCAAAGACTCTGATGATAAGC
GAGACACCTTATTCAAACGAGTTAAAACGCTCACAACAGGCCTAAAACAAATAGGCTTTAACATTCGTAGCGAGTCACAA
ATCGTGGCCTTAGAATGCGGTAGCGAAAGAAACACGGAGCATGTGCGTGACTTTCTCGAAGAGCGGAATGTGTTTGGTGC
TGTATTTTGTCGCCCTGCAACTGGAAAAAACAAGAACATTATCCGATTCTCAGTGAATGCTGACATGACTTCGCAAGATA
TAGACCGCGTTCTCAGGGTATGCGATGAAGCATTTCATCACCCTGAGTTAGAGTTCATTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(46-379)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

55.814

98.473

0.55