Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   ODQ18_RS07625 Genome accession   NZ_CP107039
Coordinates   1482471..1482920 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain 11060     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477471..1487920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS07595 (ODQ18_07595) sepM 1477550..1478575 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ODQ18_RS07600 (ODQ18_07600) ylbK 1478577..1479359 (-) 783 WP_021479345.1 patatin family protein -
  ODQ18_RS07605 (ODQ18_07605) spoVV 1479540..1480766 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ODQ18_RS07610 (ODQ18_07610) coaD 1480777..1481262 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ODQ18_RS07615 (ODQ18_07615) rsmD 1481267..1481821 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ODQ18_RS07620 (ODQ18_07620) ylbG 1482144..1482416 (-) 273 WP_009967171.1 YlbG family protein -
  ODQ18_RS07625 (ODQ18_07625) ylbF 1482471..1482920 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ODQ18_RS07630 (ODQ18_07630) ylbE 1483036..1483275 (-) 240 WP_003232231.1 YlbE-like family protein -
  ODQ18_RS07635 (ODQ18_07635) ylbD 1483291..1483689 (-) 399 WP_003232233.1 YlbD family protein -
  ODQ18_RS07640 (ODQ18_07640) ylbC 1483921..1484961 (-) 1041 WP_041850862.1 CAP domain-containing protein -
  ODQ18_RS07645 (ODQ18_07645) ylbB 1485045..1485491 (-) 447 WP_003221362.1 CBS domain-containing protein -
  ODQ18_RS07650 (ODQ18_07650) ylbA 1485631..1485993 (+) 363 WP_003232238.1 YugN family protein -
  ODQ18_RS07655 (ODQ18_07655) ctaG 1486025..1486918 (-) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  ODQ18_RS07660 (ODQ18_07660) ctaF 1486945..1487277 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  ODQ18_RS07665 (ODQ18_07665) ctaE 1487280..1487903 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=640252 ODQ18_RS07625 WP_003221370.1 1482471..1482920(-) (ylbF) [Bacillus subtilis strain 11060]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=640252 ODQ18_RS07625 WP_003221370.1 1482471..1482920(-) (ylbF) [Bacillus subtilis strain 11060]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1