Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   ODQ18_RS07595 Genome accession   NZ_CP107039
Coordinates   1477550..1478575 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain 11060     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1472550..1483575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ODQ18_RS07560 (ODQ18_07560) panEA 1473035..1473931 (-) 897 WP_003232206.1 2-dehydropantoate 2-reductase -
  ODQ18_RS07565 (ODQ18_07565) ylbP 1474091..1474573 (+) 483 WP_014476736.1 N-acetyltransferase -
  ODQ18_RS07570 (ODQ18_07570) gerR 1474630..1475211 (-) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  ODQ18_RS07575 (ODQ18_07575) rpmF 1475357..1475536 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  ODQ18_RS07580 (ODQ18_07580) ylbN 1475558..1476076 (-) 519 WP_014479718.1 YceD family protein -
  ODQ18_RS07585 (ODQ18_07585) - 1476104..1476289 (+) 186 WP_003232215.1 hypothetical protein -
  ODQ18_RS07590 (ODQ18_07590) tmcAL 1476286..1477533 (+) 1248 WP_041850860.1 nucleotidyltransferase -
  ODQ18_RS07595 (ODQ18_07595) sepM 1477550..1478575 (-) 1026 WP_003245451.1 protease DdcP Regulator
  ODQ18_RS07600 (ODQ18_07600) ylbK 1478577..1479359 (-) 783 WP_021479345.1 patatin family protein -
  ODQ18_RS07605 (ODQ18_07605) spoVV 1479540..1480766 (+) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  ODQ18_RS07610 (ODQ18_07610) coaD 1480777..1481262 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  ODQ18_RS07615 (ODQ18_07615) rsmD 1481267..1481821 (-) 555 WP_015483196.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ODQ18_RS07620 (ODQ18_07620) ylbG 1482144..1482416 (-) 273 WP_009967171.1 YlbG family protein -
  ODQ18_RS07625 (ODQ18_07625) ylbF 1482471..1482920 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  ODQ18_RS07630 (ODQ18_07630) ylbE 1483036..1483275 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=640251 ODQ18_RS07595 WP_003245451.1 1477550..1478575(-) (sepM) [Bacillus subtilis strain 11060]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=640251 ODQ18_RS07595 WP_003245451.1 1477550..1478575(-) (sepM) [Bacillus subtilis strain 11060]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402