Detailed information NTG0640250

Bioinformatically predicted

Overview

• Name: chiS
• Type: Regulator
• Locus tag: LWM38_RS02930
• Genome accession: NZ_CP090019
• Coordinates: 605617..609006 (-)
• Length: 1129 a.a.
• NCBI ID: WP_233894701.1
• Uniprot ID: -
• Organism: Vibrio kanaloae strain KH-4
• Function: chitin sensor (predicted from homology) Competence regulation

Genomic Context

Location: 600617..614006

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LWM38_RS02915 (LWM38_02915)	-	601032..602057 (-)	1026	WP_017056648.1	ABC transporter permease	-
LWM38_RS02920 (LWM38_02920)	-	602060..603046 (-)	987	WP_017056649.1	ABC transporter permease	-
LWM38_RS02925 (LWM38_02925)	-	603216..604898 (-)	1683	WP_017056650.1	ABC transporter substrate-binding protein	-
LWM38_RS02930 (LWM38_02930)	chiS	605617..609006 (-)	3390	WP_233894701.1	response regulator	Regulator
LWM38_RS02935 (LWM38_02935)	rsmC	609223..610245 (-)	1023	WP_017056652.1	16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	-
LWM38_RS02940 (LWM38_02940)	-	610355..611440 (-)	1086	WP_233894703.1	AI-2E family transporter	-
LWM38_RS02945 (LWM38_02945)	hemL	611784..613079 (-)	1296	WP_060468550.1	glutamate-1-semialdehyde 2,1-aminomutase	-
LWM38_RS02950 (LWM38_02950)	erpA	613365..613706 (+)	342	WP_004734539.1	iron-sulfur cluster insertion protein ErpA	-

Sequence

Protein

• Length: 1129 a.a.
• Molecular weight: 127312.85 Da
• Isoelectric Point: 5.3657

>NTDB_id=640250 LWM38_RS02930 WP_233894701.1 605617..609006(-) (chiS) [Vibrio kanaloae strain KH-4]
MFRFYRKQKFKRLQNTLMLAFLVLSITPVTLIAIFFLQSHSQDLQEQSTSHLVSVRDTKQQQIVDYLQAQESQVMGFVRS
ELANASGGRFYGLINAFQRLGLDIDEARSNAQQRYIQGSGDQIKTSILPESNSFIGSERYRLLHKRYHNAYLELLKRSDF
DDILLIDINGNVAYSVSKHDDYGTNLLTGKYKDSNLGTTFQQLKKDVTDRRKSNEDYTPVIVSDFKDENGKQTAWLGAPI
VQQGYLHSYAMFRLPINGITKLIADLNKSSNIQTLLVGDDHLPRSLAHSQESINLSLDVVEKALAGETAVGTFDNTQDQA
IIAAYTPIELKYATWALVVELPEKEAFARIHQLEKIFVIVMLTAIILVFVSSHYLSNFITSPLLKLTWAAEKVSAGDLDE
TMINTERKDEIGRLAVSFERMQRSIREKMQLIRSQNDELEDNLKTIQKQNEELQLANKLKDEFLATTSHELRTPLHGMVG
IAEALISGANGPIPSNQKYQLDIIINSGQRLATLVDDLLDYHKMRYGSLDIKKSAVDLSAATSLVLELSHHLLGSKPIRI
INQVPSDLGLVSSDPQRLEQVMYNLVGNAIKYTSEGKIVISASVIDDNIRVQVVDTGQGIPAEYLEHIFEPLVQAGQDAG
NYRQGAGLGLSISRQLIELMGGSLYVSSQPMLGTTFSFTLPLATQEELQNYSKSGNYSHFQAPDLIDNTQQEDSVINENP
DGPLLVIADDEPVNLRVLDSFLKLEGFRVRTACDGPETIEIIEKEKPELLLLDIMMPGMSGYQVCETLRKQYDHAQLPII
MLTALNQAEDRVRGFEVGANDYLSKPFNKQELAARITAHLSASKAEQRRLENDQLQLELKHRAMVEANLLETQGRLLEQL
ESAPEAIICTRDDQRIRFANEAAAKLFRRGQEQLKRSMADEIIAPKYLKIEQAHYCGDIDIYIDDTRQRIPSDILKLPEG
SGLDTMYIFNVGGGVNSNRVNNLETAVEALSSYAFEGDKDKLQQLKELGGEFTRIADKASGEGKNKQELMREVLVDAMTN
AIIYWESVTGETKFAFAEKSGLWRVYLDRSTLQTRTLDKYLRVETLPKTPRWRTVLSSIEFILEHCKEQTPERTHIEMLR
DKLQKLLTS

Nucleotide

• Length: 3390 bp

>NTDB_id=640250 LWM38_RS02930 WP_233894701.1 605617..609006(-) (chiS) [Vibrio kanaloae strain KH-4]
ATGTTTAGATTCTATCGTAAGCAGAAGTTTAAGCGCCTTCAAAATACTCTAATGCTGGCATTTCTTGTCCTCAGTATTAC
CCCAGTGACACTAATCGCAATATTCTTCCTCCAGTCACACAGTCAAGATCTACAGGAACAAAGCACCTCACATCTTGTTT
CGGTTCGTGATACTAAGCAACAGCAAATCGTCGATTACCTTCAAGCTCAAGAGTCCCAAGTCATGGGCTTTGTGCGATCA
GAACTGGCTAATGCCAGTGGTGGGCGATTCTATGGATTGATCAATGCATTTCAAAGGCTCGGCCTAGACATTGACGAAGC
ACGTAGCAATGCACAGCAGCGTTATATTCAAGGATCAGGCGATCAAATCAAAACATCTATTCTTCCAGAATCGAACAGTT
TTATTGGCAGTGAGCGTTATCGCCTACTACACAAACGCTACCACAACGCTTACCTAGAACTGCTTAAGCGCTCTGATTTT
GACGATATCTTATTGATTGATATCAACGGTAACGTTGCTTATTCCGTATCTAAGCATGATGATTATGGCACCAATTTACT
GACAGGTAAGTACAAGGATTCAAACCTAGGCACTACCTTTCAACAACTAAAAAAAGACGTAACCGACCGACGCAAATCTA
ATGAGGATTACACGCCTGTTATTGTCTCTGACTTTAAAGACGAGAATGGTAAACAAACAGCATGGTTAGGTGCGCCTATC
GTACAGCAGGGCTATCTGCACAGCTATGCGATGTTTAGATTACCGATCAACGGCATAACGAAACTTATCGCGGATCTCAA
CAAGAGTTCAAATATTCAGACGCTGCTTGTGGGTGATGATCACCTGCCGCGTAGCCTTGCGCATTCGCAAGAATCGATCA
ACTTAAGCCTAGACGTTGTTGAAAAAGCGCTTGCGGGCGAAACTGCAGTGGGTACGTTCGATAACACTCAAGATCAAGCG
ATCATCGCTGCCTATACGCCAATTGAACTCAAATATGCAACTTGGGCTCTCGTTGTCGAGCTGCCAGAGAAAGAAGCATT
TGCCCGAATTCACCAGCTAGAAAAGATCTTCGTAATCGTAATGTTAACTGCAATAATTCTTGTATTTGTTTCATCGCATT
ACCTATCCAACTTCATCACATCGCCGCTCCTCAAACTCACTTGGGCAGCCGAGAAAGTATCTGCTGGTGATCTTGATGAA
ACGATGATCAATACCGAGCGAAAAGATGAGATAGGCCGCCTTGCCGTAAGCTTCGAACGAATGCAGCGCTCAATTCGCGA
AAAGATGCAGCTGATAAGAAGCCAGAATGATGAACTTGAGGACAACCTTAAGACCATTCAAAAGCAAAACGAAGAGTTGC
AACTGGCCAACAAACTTAAAGATGAGTTCTTAGCGACGACTTCACACGAACTTAGAACACCACTGCATGGGATGGTTGGT
ATTGCCGAAGCACTAATATCAGGTGCGAACGGTCCAATTCCATCTAACCAGAAATACCAGCTAGATATCATCATTAATAG
TGGTCAGAGACTAGCAACACTGGTTGATGACCTGCTTGATTACCACAAAATGCGCTACGGCAGCTTGGATATTAAGAAAT
CTGCGGTTGATCTGTCTGCAGCCACCAGCTTGGTGCTTGAGCTGTCACATCACCTGCTGGGTAGTAAACCAATCCGCATT
ATTAACCAAGTTCCTAGTGATTTGGGGCTAGTTTCATCTGACCCTCAACGCCTTGAGCAAGTGATGTATAACTTGGTCGG
TAATGCCATCAAGTACACATCAGAAGGTAAGATAGTCATCTCTGCAAGCGTTATTGACGACAACATTCGCGTGCAAGTTG
TTGATACCGGACAAGGTATACCCGCTGAGTATCTAGAGCACATCTTTGAACCCTTAGTTCAAGCAGGTCAAGATGCAGGC
AACTATCGTCAAGGTGCAGGGCTTGGGTTATCCATTAGCCGTCAACTGATTGAGCTTATGGGCGGGTCACTTTACGTAAG
TAGTCAACCGATGCTTGGCACTACCTTCAGCTTTACGTTACCTTTAGCTACGCAAGAAGAATTGCAGAACTACAGCAAGT
CTGGCAACTACTCACACTTTCAAGCTCCAGATTTAATTGATAATACTCAACAAGAAGACAGCGTTATCAATGAAAACCCT
GACGGCCCACTCTTAGTAATCGCAGATGATGAGCCAGTAAACCTAAGAGTATTAGACAGTTTCTTGAAGTTAGAAGGTTT
TCGAGTTCGTACCGCATGTGACGGCCCAGAAACCATTGAAATAATTGAAAAAGAGAAGCCTGAATTACTTCTACTCGACA
TCATGATGCCTGGTATGAGTGGCTACCAGGTTTGTGAGACACTGCGTAAACAATATGACCATGCACAGTTACCAATTATC
ATGCTTACGGCGCTTAACCAGGCAGAGGACCGAGTGCGAGGCTTCGAAGTCGGAGCCAATGACTACTTATCCAAGCCATT
CAACAAACAAGAGTTAGCCGCTCGAATTACTGCGCACCTATCAGCAAGCAAAGCTGAGCAAAGACGACTTGAAAATGACC
AACTGCAACTAGAGCTTAAACACAGAGCCATGGTTGAAGCTAATTTACTAGAGACACAAGGACGTTTACTAGAACAGTTA
GAATCAGCCCCTGAAGCCATTATATGTACTCGTGATGATCAACGTATTCGCTTCGCCAACGAAGCAGCAGCGAAACTCTT
TAGGCGTGGGCAAGAGCAACTTAAGCGTTCAATGGCTGACGAAATCATTGCTCCTAAGTACCTCAAAATAGAACAAGCCC
ACTACTGCGGTGATATTGATATCTACATAGATGACACACGTCAGCGCATTCCAAGTGATATCCTTAAGCTACCTGAAGGC
TCAGGGCTCGACACCATGTACATCTTCAATGTGGGTGGTGGCGTTAACTCAAACCGAGTCAATAACCTTGAAACGGCGGT
TGAGGCACTTTCAAGCTACGCCTTTGAAGGTGACAAAGATAAGCTCCAACAGCTGAAAGAGCTCGGAGGTGAGTTTACTC
GTATCGCAGATAAAGCGAGCGGTGAAGGTAAAAATAAACAGGAATTAATGCGTGAAGTATTGGTTGATGCCATGACCAAT
GCCATCATTTACTGGGAATCAGTAACAGGTGAAACTAAGTTTGCCTTCGCAGAGAAGAGTGGCTTGTGGCGCGTCTACTT
AGACCGCAGTACGCTGCAAACTCGAACACTAGACAAATACCTACGCGTAGAAACCCTACCGAAAACGCCTCGCTGGCGAA
CGGTACTGAGCTCAATCGAATTCATACTGGAACACTGCAAAGAACAGACGCCAGAAAGAACCCACATTGAGATGCTAAGG
GATAAACTTCAGAAACTACTGACCAGTTAA

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (726-836)

• His Kinase A (phospho-acceptor) domain (HisKA) (460-525)

• Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) (574-683)

• PAS domain (PAS_8) (880-914)

• HAMP domain (HAMP) (375-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
chiS	Vibrio cholerae strain A1552	75.642	100	0.756