Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   LWM38_RS02660 Genome accession   NZ_CP090019
Coordinates   538461..538979 (+) Length   172 a.a.
NCBI ID   WP_017056597.1    Uniprot ID   A0A2N7J9T1
Organism   Vibrio kanaloae strain KH-4     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 533461..543979
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LWM38_RS02650 (LWM38_02650) gshA 536207..537775 (+) 1569 WP_077680851.1 glutamate--cysteine ligase -
  LWM38_RS02655 (LWM38_02655) - 537786..538436 (+) 651 WP_077680850.1 hypothetical protein -
  LWM38_RS02660 (LWM38_02660) luxS 538461..538979 (+) 519 WP_017056597.1 S-ribosylhomocysteine lyase Regulator
  LWM38_RS02665 (LWM38_02665) - 539107..540378 (-) 1272 WP_017056598.1 HlyC/CorC family transporter -
  LWM38_RS02670 (LWM38_02670) - 540507..541301 (-) 795 WP_017056599.1 inner membrane protein YpjD -
  LWM38_RS02675 (LWM38_02675) ffh 541502..542887 (+) 1386 WP_102507341.1 signal recognition particle protein -
  LWM38_RS02680 (LWM38_02680) rpsP 543099..543347 (+) 249 WP_004735508.1 30S ribosomal protein S16 -
  LWM38_RS02685 (LWM38_02685) rimM 543372..543926 (+) 555 WP_017056602.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18964.67 Da        Isoelectric Point: 4.4901

>NTDB_id=640245 LWM38_RS02660 WP_017056597.1 538461..538979(+) (luxS) [Vibrio kanaloae strain KH-4]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNQLNGSDVEIIDISP
MGCRTGFYMSLIGTPTEQQVADGWLAAMQDVLKVENQNKIPELNEYQCGTAAMHSLDEAKEIANAIIAAGISVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=640245 LWM38_RS02660 WP_017056597.1 538461..538979(+) (luxS) [Vibrio kanaloae strain KH-4]
ATGCCTTTATTAGATAGTTTCACTGTTGATCATACACGCATGAACGCACCAGCCGTTCGTGTCGCGAAAACAATGCAAAC
CCCAAAAGGGGATACCATCACTGTGTTTGACTTGCGTTTTACCGCGCCAAACAAAGATATCCTATCTGAGAAAGGTATCC
ATACGCTAGAGCACCTATACGCTGGATTCATGCGTAATCAACTGAACGGTTCAGATGTAGAGATTATCGATATCTCACCG
ATGGGGTGTCGTACCGGTTTCTACATGAGCCTGATTGGTACGCCTACAGAGCAACAAGTGGCAGACGGATGGTTGGCTGC
AATGCAAGACGTACTGAAAGTTGAGAATCAAAATAAGATCCCTGAACTGAACGAATACCAATGTGGTACCGCGGCAATGC
ACTCTTTGGATGAAGCGAAAGAGATCGCTAACGCGATCATCGCTGCAGGTATTTCTGTAAACAAGAATGATGAACTGGCA
TTGCCAGAGTCGATGCTTCAAGAGCTTAAAATTGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7J9T1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

89.474

99.419

0.89